Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 MIR572-201ENST00000384983 95 ntBASIC24.64■■□□□ 1.54
CNKSR3Q6P9H4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC24.64■■□□□ 1.54
CNKSR3Q6P9H4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.53
CNKSR3Q6P9H4 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CNKSR3Q6P9H4 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
CNKSR3Q6P9H4 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
CNKSR3Q6P9H4 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC24.64■■□□□ 1.53
CNKSR3Q6P9H4 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC24.63■■□□□ 1.53
CNKSR3Q6P9H4 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CNKSR3Q6P9H4 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CNKSR3Q6P9H4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CNKSR3Q6P9H4 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CNKSR3Q6P9H4 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
CNKSR3Q6P9H4 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.63■■□□□ 1.53
CNKSR3Q6P9H4 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CNKSR3Q6P9H4 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 AC012414.1-201ENST00000556676 535 ntBASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
CNKSR3Q6P9H4 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 AL354811.1-201ENST00000610286 706 ntBASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 MIR6084-201ENST00000622012 110 ntBASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 ALDH1A3-203ENST00000557963 1670 ntBASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 AL121749.1-202ENST00000609313 2153 ntBASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CNKSR3Q6P9H4 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CNKSR3Q6P9H4 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC24.6■■□□□ 1.53
CNKSR3Q6P9H4 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.6■■□□□ 1.53
CNKSR3Q6P9H4 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC24.6■■□□□ 1.53
CNKSR3Q6P9H4 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CNKSR3Q6P9H4 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24.6■■□□□ 1.53
CNKSR3Q6P9H4 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CNKSR3Q6P9H4 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC24.59■■□□□ 1.53
CNKSR3Q6P9H4 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CNKSR3Q6P9H4 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CNKSR3Q6P9H4 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CNKSR3Q6P9H4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CNKSR3Q6P9H4 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CNKSR3Q6P9H4 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC24.58■■□□□ 1.53
CNKSR3Q6P9H4 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.58■■□□□ 1.53
CNKSR3Q6P9H4 AC004911.1-201ENST00000416316 871 ntBASIC24.58■■□□□ 1.53
CNKSR3Q6P9H4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC24.58■■□□□ 1.53
CNKSR3Q6P9H4 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC24.58■■□□□ 1.53
CNKSR3Q6P9H4 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CNKSR3Q6P9H4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC24.58■■□□□ 1.52
CNKSR3Q6P9H4 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC24.58■■□□□ 1.52
CNKSR3Q6P9H4 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CNKSR3Q6P9H4 HLA-L-211ENST00000482052 1765 ntBASIC24.57■■□□□ 1.52
CNKSR3Q6P9H4 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC24.57■■□□□ 1.52
CNKSR3Q6P9H4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
CNKSR3Q6P9H4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC24.57■■□□□ 1.52
CNKSR3Q6P9H4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC24.57■■□□□ 1.52
CNKSR3Q6P9H4 CCDC92B-201ENST00000575506 885 ntBASIC24.57■■□□□ 1.52
CNKSR3Q6P9H4 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
CNKSR3Q6P9H4 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CNKSR3Q6P9H4 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
CNKSR3Q6P9H4 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CNKSR3Q6P9H4 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CNKSR3Q6P9H4 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CNKSR3Q6P9H4 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CNKSR3Q6P9H4 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CNKSR3Q6P9H4 AC133637.1-201ENST00000624115 1537 ntBASIC24.56■■□□□ 1.52
CNKSR3Q6P9H4 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CNKSR3Q6P9H4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC24.55■■□□□ 1.52
CNKSR3Q6P9H4 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
CNKSR3Q6P9H4 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC24.55■■□□□ 1.52
CNKSR3Q6P9H4 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC24.55■■□□□ 1.52
CNKSR3Q6P9H4 DLX3-202ENST00000512495 834 ntTSL 2 BASIC24.55■■□□□ 1.52
CNKSR3Q6P9H4 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24.55■■□□□ 1.52
CNKSR3Q6P9H4 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CNKSR3Q6P9H4 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CNKSR3Q6P9H4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.54■■□□□ 1.52
CNKSR3Q6P9H4 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CNKSR3Q6P9H4 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CNKSR3Q6P9H4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
CNKSR3Q6P9H4 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.54■■□□□ 1.52
CNKSR3Q6P9H4 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms