Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3aQ3ULJ3 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3aQ3ULJ3 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3aQ3ULJ3 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Upf3aQ3ULJ3 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Upf3aQ3ULJ3 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Upf3aQ3ULJ3 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Upf3aQ3ULJ3 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Upf3aQ3ULJ3 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Upf3aQ3ULJ3 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Upf3aQ3ULJ3 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Upf3aQ3ULJ3 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Upf3aQ3ULJ3 Gm5913-201ENSMUST00000119397 1399 ntBASIC21.42■■□□□ 1.02
Upf3aQ3ULJ3 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Upf3aQ3ULJ3 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Upf3aQ3ULJ3 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Upf3aQ3ULJ3 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Upf3aQ3ULJ3 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Upf3aQ3ULJ3 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Upf3aQ3ULJ3 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Upf3aQ3ULJ3 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Upf3aQ3ULJ3 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 Gm37415-201ENSMUST00000192265 2054 ntBASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Upf3aQ3ULJ3 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
Upf3aQ3ULJ3 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
Upf3aQ3ULJ3 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Upf3aQ3ULJ3 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Upf3aQ3ULJ3 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Upf3aQ3ULJ3 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Upf3aQ3ULJ3 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
Upf3aQ3ULJ3 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC21.38■■□□□ 1.01
Upf3aQ3ULJ3 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Upf3aQ3ULJ3 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Upf3aQ3ULJ3 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Upf3aQ3ULJ3 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.38■■□□□ 1.01
Upf3aQ3ULJ3 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
Upf3aQ3ULJ3 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Upf3aQ3ULJ3 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Upf3aQ3ULJ3 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Upf3aQ3ULJ3 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Gm37179-201ENSMUST00000194862 823 ntBASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Upf3aQ3ULJ3 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Upf3aQ3ULJ3 Gm11421-201ENSMUST00000122124 294 ntBASIC21.35■■□□□ 1.01
Upf3aQ3ULJ3 Gm10033-202ENSMUST00000211874 928 ntBASIC21.35■■□□□ 1.01
Upf3aQ3ULJ3 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Upf3aQ3ULJ3 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Upf3aQ3ULJ3 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Upf3aQ3ULJ3 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Upf3aQ3ULJ3 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21.35■■□□□ 1.01
Upf3aQ3ULJ3 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Upf3aQ3ULJ3 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Upf3aQ3ULJ3 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Upf3aQ3ULJ3 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Upf3aQ3ULJ3 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Upf3aQ3ULJ3 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Upf3aQ3ULJ3 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Upf3aQ3ULJ3 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Upf3aQ3ULJ3 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf3aQ3ULJ3 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1.01
Upf3aQ3ULJ3 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.33■■□□□ 1.01
Upf3aQ3ULJ3 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC21.33■■□□□ 1.01
Upf3aQ3ULJ3 Gm18671-201ENSMUST00000214826 683 ntBASIC21.33■■□□□ 1.01
Upf3aQ3ULJ3 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf3aQ3ULJ3 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf3aQ3ULJ3 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Upf3aQ3ULJ3 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf3aQ3ULJ3 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC21.32■■□□□ 1
Upf3aQ3ULJ3 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms