Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Col5a1O88207 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC18.58■□□□□ 0.57
Col5a1O88207 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.58■□□□□ 0.57
Col5a1O88207 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC18.58■□□□□ 0.57
Col5a1O88207 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col5a1O88207 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.58■□□□□ 0.56
Col5a1O88207 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col5a1O88207 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col5a1O88207 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col5a1O88207 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col5a1O88207 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Col5a1O88207 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.58■□□□□ 0.56
Col5a1O88207 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.58■□□□□ 0.56
Col5a1O88207 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col5a1O88207 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col5a1O88207 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col5a1O88207 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.56■□□□□ 0.56
Col5a1O88207 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col5a1O88207 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Col5a1O88207 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col5a1O88207 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col5a1O88207 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col5a1O88207 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col5a1O88207 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col5a1O88207 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col5a1O88207 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col5a1O88207 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
Col5a1O88207 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col5a1O88207 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC18.56■□□□□ 0.56
Col5a1O88207 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col5a1O88207 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col5a1O88207 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col5a1O88207 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Col5a1O88207 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col5a1O88207 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Col5a1O88207 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col5a1O88207 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.55■□□□□ 0.56
Col5a1O88207 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC18.55■□□□□ 0.56
Col5a1O88207 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col5a1O88207 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col5a1O88207 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Col5a1O88207 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col5a1O88207 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col5a1O88207 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.54■□□□□ 0.56
Col5a1O88207 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC18.54■□□□□ 0.56
Col5a1O88207 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col5a1O88207 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.54■□□□□ 0.56
Col5a1O88207 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col5a1O88207 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col5a1O88207 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col5a1O88207 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.53■□□□□ 0.56
Col5a1O88207 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col5a1O88207 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col5a1O88207 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col5a1O88207 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC18.53■□□□□ 0.56
Col5a1O88207 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
Col5a1O88207 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Col5a1O88207 Gm32051-202ENSMUST00000197905 2385 ntBASIC18.53■□□□□ 0.56
Col5a1O88207 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col5a1O88207 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col5a1O88207 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col5a1O88207 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col5a1O88207 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col5a1O88207 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC18.52■□□□□ 0.56
Col5a1O88207 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Col5a1O88207 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Col5a1O88207 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col5a1O88207 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col5a1O88207 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.52■□□□□ 0.55
Col5a1O88207 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col5a1O88207 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col5a1O88207 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col5a1O88207 Gm22325-201ENSMUST00000158904 308 ntBASIC18.51■□□□□ 0.55
Col5a1O88207 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col5a1O88207 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col5a1O88207 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col5a1O88207 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col5a1O88207 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col5a1O88207 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col5a1O88207 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC18.51■□□□□ 0.55
Col5a1O88207 Gm10653-202ENSMUST00000139570 835 ntBASIC18.51■□□□□ 0.55
Col5a1O88207 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.51■□□□□ 0.55
Col5a1O88207 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC18.51■□□□□ 0.55
Col5a1O88207 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col5a1O88207 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col5a1O88207 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Col5a1O88207 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col5a1O88207 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col5a1O88207 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col5a1O88207 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC18.5■□□□□ 0.55
Col5a1O88207 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col5a1O88207 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC18.5■□□□□ 0.55
Col5a1O88207 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC18.5■□□□□ 0.55
Col5a1O88207 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col5a1O88207 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col5a1O88207 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col5a1O88207 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Col5a1O88207 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Col5a1O88207 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC18.49■□□□□ 0.55
Col5a1O88207 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms