Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trbv3A0A0A6YYE2 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trbv3A0A0A6YYE2 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trbv3A0A0A6YYE2 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trbv3A0A0A6YYE2 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC15.58■□□□□ 0.08
Trbv3A0A0A6YYE2 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv3A0A0A6YYE2 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC15.58■□□□□ 0.08
Trbv3A0A0A6YYE2 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv3A0A0A6YYE2 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv3A0A0A6YYE2 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trbv3A0A0A6YYE2 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trbv3A0A0A6YYE2 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trbv3A0A0A6YYE2 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC15.55■□□□□ 0.08
Trbv3A0A0A6YYE2 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv3A0A0A6YYE2 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv3A0A0A6YYE2 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv3A0A0A6YYE2 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv3A0A0A6YYE2 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC15.55■□□□□ 0.08
Trbv3A0A0A6YYE2 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv3A0A0A6YYE2 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv3A0A0A6YYE2 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv3A0A0A6YYE2 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trbv3A0A0A6YYE2 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC15.54■□□□□ 0.08
Trbv3A0A0A6YYE2 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Gm43909-201ENSMUST00000203443 1876 ntBASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trbv3A0A0A6YYE2 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv3A0A0A6YYE2 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv3A0A0A6YYE2 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv3A0A0A6YYE2 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC15.52■□□□□ 0.08
Trbv3A0A0A6YYE2 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC15.52■□□□□ 0.08
Trbv3A0A0A6YYE2 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trbv3A0A0A6YYE2 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trbv3A0A0A6YYE2 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trbv3A0A0A6YYE2 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
Trbv3A0A0A6YYE2 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trbv3A0A0A6YYE2 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trbv3A0A0A6YYE2 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trbv3A0A0A6YYE2 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trbv3A0A0A6YYE2 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv3A0A0A6YYE2 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv3A0A0A6YYE2 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv3A0A0A6YYE2 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trbv3A0A0A6YYE2 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Trbv3A0A0A6YYE2 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC15.51■□□□□ 0.07
Trbv3A0A0A6YYE2 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms