Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Gm37122-201ENSMUST00000195313 1567 ntBASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Gtf3c6-206ENSMUST00000217537 2526 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Vwa5b2-207ENSMUST00000159780 4042 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Zfp114-203ENSMUST00000206547 3154 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Abcf1-201ENSMUST00000043757 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Gm12849-201ENSMUST00000120013 739 ntBASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Uba52-ps-201ENSMUST00000183770 379 ntBASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 AC154248.2-201ENSMUST00000221964 659 ntTSL 5 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 AC151275.1-201ENSMUST00000224870 585 ntBASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Ttc23-201ENSMUST00000032774 2492 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Atf7ip2-201ENSMUST00000044005 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Fhdc1-201ENSMUST00000091002 4162 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Sh3rf1Q69ZI1 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Gm38187-201ENSMUST00000195609 4709 ntBASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Tia1-206ENSMUST00000113713 3108 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Ccdc24-206ENSMUST00000164853 3990 ntTSL 2 BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Gm4726-201ENSMUST00000135604 736 ntBASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Gm6019-201ENSMUST00000148369 736 ntBASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Gm20618-202ENSMUST00000177482 1227 ntTSL 3 BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Gm9540-201ENSMUST00000188230 478 ntBASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 AC122408.1-201ENSMUST00000218949 218 ntBASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 AC102569.1-201ENSMUST00000221563 685 ntBASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 AC171241.1-201ENSMUST00000228144 1166 ntBASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Gm14150-201ENSMUST00000122404 1354 ntBASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Gm10463-202ENSMUST00000195772 2889 ntBASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Lpin3-204ENSMUST00000109457 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Tasp1-203ENSMUST00000110079 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Nfic-201ENSMUST00000020461 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Dyrk4-202ENSMUST00000078521 2252 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Uhrf1-202ENSMUST00000113035 3402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Ralgps1-202ENSMUST00000091039 2738 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Sh3rf1Q69ZI1 Prorsd1-202ENSMUST00000133103 2126 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Camk2g-201ENSMUST00000071816 3703 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Sh2d3c-202ENSMUST00000113242 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Sh3rf1Q69ZI1 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms