Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Zfp943-201ENSMUST00000055349 2741 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Prom2-202ENSMUST00000103214 4190 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 St6galnac4-201ENSMUST00000102818 3626 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Cyp7b1-201ENSMUST00000035625 2166 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Tiam2-201ENSMUST00000072156 6127 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Apobec3-204ENSMUST00000175714 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Tasp1-202ENSMUST00000099304 2127 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Faim2-201ENSMUST00000023750 4520 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Bcl9l-203ENSMUST00000218183 6771 ntAPPRIS P2 TSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Anapc15-213ENSMUST00000178851 2797 ntTSL 2 BASIC9.11□□□□□ -0.95
Cdx1P18111 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Col19a1-202ENSMUST00000115244 4266 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
Cdx1P18111 Celf1-205ENSMUST00000111449 4441 ntAPPRIS ALT1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Cdx1P18111 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC9.1□□□□□ -0.95
Cdx1P18111 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
Cdx1P18111 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Plpp3-201ENSMUST00000064139 3159 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Mybpc3-201ENSMUST00000111430 4154 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Cdx1P18111 Hmgb1-201ENSMUST00000085546 2838 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Epc1-201ENSMUST00000028100 3965 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Cenpj-203ENSMUST00000225951 4756 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
Cdx1P18111 Aspm-201ENSMUST00000053364 9867 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Tubb5-201ENSMUST00000001566 2649 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC9.1□□□□□ -0.95
Cdx1P18111 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
Cdx1P18111 Gm35850-202ENSMUST00000211705 2120 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Oprl1-205ENSMUST00000108768 2914 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 AC126444.1-201ENSMUST00000225938 1768 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 Chst15-202ENSMUST00000080215 4813 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Dock6-207ENSMUST00000217336 6880 ntAPPRIS P2 TSL 5 BASIC9.1□□□□□ -0.95
Cdx1P18111 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC9.1□□□□□ -0.95
Cdx1P18111 Gm12566-201ENSMUST00000121479 359 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC9.1□□□□□ -0.95
Cdx1P18111 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
Cdx1P18111 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC9.1□□□□□ -0.95
Cdx1P18111 Gm8018-201ENSMUST00000173536 789 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC9.1□□□□□ -0.95
Cdx1P18111 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Uba52-ps-201ENSMUST00000183770 379 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 Mir6979-201ENSMUST00000183927 56 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Mir6927-201ENSMUST00000184494 71 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC9.1□□□□□ -0.95
Cdx1P18111 AC154222.2-201ENSMUST00000225848 607 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Gm10312-201ENSMUST00000078515 489 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 Ilf3-208ENSMUST00000214758 3177 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Cdx1P18111 Xirp1-201ENSMUST00000111635 5839 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Nek4-203ENSMUST00000226551 4098 ntAPPRIS ALT2 BASIC9.1□□□□□ -0.95
Cdx1P18111 Gm45041-201ENSMUST00000207366 3108 ntBASIC9.1□□□□□ -0.95
Cdx1P18111 Mcf2l-222ENSMUST00000173099 6081 ntTSL 5 BASIC9.1□□□□□ -0.95
Cdx1P18111 Aldh1a3-201ENSMUST00000015278 3443 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Adck1-201ENSMUST00000101165 2158 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Gm26862-201ENSMUST00000181886 2191 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Blk-201ENSMUST00000014597 2326 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Sh2d7-201ENSMUST00000060242 2759 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Zfp775-203ENSMUST00000204095 4143 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
Cdx1P18111 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Zfp352-202ENSMUST00000107129 2276 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Adcy6-201ENSMUST00000096224 6038 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Cdx1P18111 Phtf1os-201ENSMUST00000160110 4046 ntBASIC9.09□□□□□ -0.95
Cdx1P18111 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Cdx1P18111 Gm43908-201ENSMUST00000205074 1472 ntBASIC9.09□□□□□ -0.95
Cdx1P18111 Nfkbiz-201ENSMUST00000036273 4115 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
Cdx1P18111 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Cdx1P18111 Cd2bp2-203ENSMUST00000205316 2912 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Cdx1P18111 Pak7-201ENSMUST00000035264 4848 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Cdx1P18111 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
Cdx1P18111 Ppil2-201ENSMUST00000023455 2333 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
Cdx1P18111 Pard3-213ENSMUST00000160766 4949 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
Cdx1P18111 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC9.09□□□□□ -0.95
Cdx1P18111 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Cdx1P18111 Mcf2-204ENSMUST00000228150 3336 ntAPPRIS ALT2 BASIC9.09□□□□□ -0.95
Cdx1P18111 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
Cdx1P18111 Slc38a5-201ENSMUST00000033512 1868 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Cdx1P18111 Jade1-201ENSMUST00000026865 5481 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
Cdx1P18111 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC9.09□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 56.9 ms