Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CISHQ9NSE2 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 LINC02486-201ENST00000604157 3000 ntBASIC15.34■□□□□ 0.05
CISHQ9NSE2 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.34■□□□□ 0.05
CISHQ9NSE2 SLC16A6P1-201ENST00000413214 1059 ntBASIC15.34■□□□□ 0.05
CISHQ9NSE2 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 AC011742.3-201ENST00000439053 820 ntBASIC15.34■□□□□ 0.05
CISHQ9NSE2 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 AC099548.2-209ENST00000480264 625 ntBASIC15.34■□□□□ 0.05
CISHQ9NSE2 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 AL512310.5-201ENST00000551999 515 ntBASIC15.34■□□□□ 0.05
CISHQ9NSE2 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 GPR182-203ENST00000622922 591 ntBASIC15.34■□□□□ 0.05
CISHQ9NSE2 AC244452.3-201ENST00000636814 210 ntBASIC15.34■□□□□ 0.05
CISHQ9NSE2 AL805961.1-203ENST00000641078 1258 ntBASIC15.34■□□□□ 0.05
CISHQ9NSE2 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CISHQ9NSE2 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
CISHQ9NSE2 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CISHQ9NSE2 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC15.33■□□□□ 0.05
CISHQ9NSE2 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CISHQ9NSE2 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.05
CISHQ9NSE2 KRT8P21-201ENST00000430398 1491 ntBASIC15.33■□□□□ 0.05
CISHQ9NSE2 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CISHQ9NSE2 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CISHQ9NSE2 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CISHQ9NSE2 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
CISHQ9NSE2 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CISHQ9NSE2 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CISHQ9NSE2 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CISHQ9NSE2 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
CISHQ9NSE2 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
CISHQ9NSE2 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.33■□□□□ 0.05
CISHQ9NSE2 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 TSPY25P-201ENST00000429463 745 ntBASIC15.33■□□□□ 0.04
CISHQ9NSE2 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 BX284668.4-201ENST00000453917 508 ntBASIC15.33■□□□□ 0.04
CISHQ9NSE2 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 TUBBP5-203ENST00000508529 1334 ntBASIC15.33■□□□□ 0.04
CISHQ9NSE2 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CISHQ9NSE2 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CISHQ9NSE2 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms