Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Vmn1r220-201ENSMUST00000072385 897 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Gm10702-201ENSMUST00000098929 1268 ntBASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Mybph-201ENSMUST00000038445 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Usp49Q6P9L4 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm37580-201ENSMUST00000192408 2800 ntBASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm9062-201ENSMUST00000117712 727 ntBASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm10731-201ENSMUST00000181171 448 ntBASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm42867-201ENSMUST00000202995 469 ntBASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm10109-202ENSMUST00000206890 1211 ntBASIC12.63□□□□□ -0.39
Usp49Q6P9L4 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm4797-201ENSMUST00000219075 1283 ntBASIC12.63□□□□□ -0.39
Usp49Q6P9L4 AC154290.1-201ENSMUST00000223786 1240 ntBASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm23105-201ENSMUST00000083719 134 ntBASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Gm43972-201ENSMUST00000181398 1467 ntBASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Rgr-203ENSMUST00000225070 4704 ntBASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Usp49Q6P9L4 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Pdcd10-205ENSMUST00000161137 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm44415-201ENSMUST00000204151 2112 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Thbs4-201ENSMUST00000022213 3198 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Ift88-201ENSMUST00000122063 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Bbs2-201ENSMUST00000034206 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Bco1-203ENSMUST00000176860 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm13611-201ENSMUST00000118269 318 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm15615-201ENSMUST00000118876 198 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm24992-201ENSMUST00000157412 130 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm3508-201ENSMUST00000186012 792 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm43830-201ENSMUST00000198760 1067 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm18539-201ENSMUST00000204745 1090 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm43916-201ENSMUST00000205062 967 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 AC122408.1-201ENSMUST00000218949 218 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 AC154276.3-201ENSMUST00000227643 998 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Gm43522-201ENSMUST00000196697 1922 ntBASIC12.62□□□□□ -0.39
Usp49Q6P9L4 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms