Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Smc1aQ9CU62 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Gm18782-201ENSMUST00000209023 1399 ntBASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Gm22144-201ENSMUST00000157402 102 ntBASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Dzip1l-202ENSMUST00000112884 3791 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Smc1aQ9CU62 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm4993-201ENSMUST00000118719 1174 ntBASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm11246-201ENSMUST00000120880 345 ntBASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm16397-201ENSMUST00000122201 494 ntBASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm4726-201ENSMUST00000135604 736 ntBASIC12.72□□□□□ -0.37
Smc1aQ9CU62 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm6019-201ENSMUST00000148369 736 ntBASIC12.72□□□□□ -0.37
Smc1aQ9CU62 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm9358-201ENSMUST00000183067 927 ntBASIC12.72□□□□□ -0.37
Smc1aQ9CU62 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC12.72□□□□□ -0.37
Smc1aQ9CU62 AC153505.1-201ENSMUST00000218819 1071 ntBASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm9785-201ENSMUST00000062642 1006 ntBASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm8420-201ENSMUST00000097103 598 ntBASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Smc1aQ9CU62 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Smc1aQ9CU62 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Smc1aQ9CU62 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Smc1aQ9CU62 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Smc1aQ9CU62 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 52.9 ms