Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Atxn2l-206ENSMUST00000206577 3894 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Clip3-201ENSMUST00000014065 3300 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Ppp1r3c-201ENSMUST00000087321 2719 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Apobr-201ENSMUST00000039522 3685 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Col5a2-201ENSMUST00000086430 6625 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Gm20052-201ENSMUST00000200831 1525 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Dctn4-202ENSMUST00000223590 1530 ntBASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Adar-205ENSMUST00000121094 2321 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Marveld2-204ENSMUST00000225754 3111 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Card14-201ENSMUST00000053245 3958 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Smad2-201ENSMUST00000025453 2410 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Zfp217-201ENSMUST00000063710 5685 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Rnf121-203ENSMUST00000106953 2545 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Gm26625-201ENSMUST00000181519 2538 ntTSL 5 BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC10.73□□□□□ -0.69
Rnf220Q6PDX6 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 AC115746.1-201ENSMUST00000228949 3617 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Gm7103-201ENSMUST00000195642 1852 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 AC158779.1-201ENSMUST00000228912 3861 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Il12rb2-201ENSMUST00000018485 2998 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Tal2-201ENSMUST00000030124 2971 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Cd163-201ENSMUST00000032234 4404 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Specc1-214ENSMUST00000202389 3363 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 AC122273.1-201ENSMUST00000213634 2327 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Myh1-203ENSMUST00000124516 6081 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Gm10434-201ENSMUST00000101158 471 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Gm6023-201ENSMUST00000118217 606 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Gm13875-201ENSMUST00000120162 282 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Gm11424-201ENSMUST00000121929 829 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Gm43275-201ENSMUST00000202053 1020 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Zfp957-201ENSMUST00000040802 2613 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Ppp6r2-201ENSMUST00000088788 2887 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Henmt1-203ENSMUST00000106586 1838 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Efna5-201ENSMUST00000076840 4032 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Gm26574-201ENSMUST00000181876 2141 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 D630003M21Rik-202ENSMUST00000103121 4521 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Ss18l2-206ENSMUST00000215966 2316 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Rnf220Q6PDX6 Tubb5-201ENSMUST00000001566 2649 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Sdhc-202ENSMUST00000111336 3171 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Gm15953-201ENSMUST00000117656 1732 ntBASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 March10-204ENSMUST00000138977 2979 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Gm28882-201ENSMUST00000185504 314 ntBASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Gm4366-201ENSMUST00000201488 1342 ntBASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Rnf220Q6PDX6 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 247.9 ms