Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SCAPERQ9BY12 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 AC018529.2-202ENST00000611482 3087 ntBASIC21.18■□□□□ 0.98
SCAPERQ9BY12 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 MAGEA7P-201ENST00000436482 942 ntBASIC21.18■□□□□ 0.98
SCAPERQ9BY12 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 AC010900.1-201ENST00000449849 1296 ntBASIC21.18■□□□□ 0.98
SCAPERQ9BY12 RHOQP2-201ENST00000449922 579 ntBASIC21.18■□□□□ 0.98
SCAPERQ9BY12 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 GULOP-201ENST00000454030 748 ntBASIC21.18■□□□□ 0.98
SCAPERQ9BY12 TBC1D3P6-201ENST00000505954 962 ntBASIC21.18■□□□□ 0.98
SCAPERQ9BY12 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 KRT8P34-201ENST00000577607 1044 ntBASIC21.18■□□□□ 0.98
SCAPERQ9BY12 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SCAPERQ9BY12 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 AHCYP3-201ENST00000420053 1279 ntBASIC21.17■□□□□ 0.98
SCAPERQ9BY12 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 AC016582.2-202ENST00000587765 1094 ntBASIC21.17■□□□□ 0.98
SCAPERQ9BY12 AC004466.2-201ENST00000614749 516 ntBASIC21.17■□□□□ 0.98
SCAPERQ9BY12 AC048382.6-201ENST00000621980 1223 ntBASIC21.17■□□□□ 0.98
SCAPERQ9BY12 AC022532.1-201ENST00000624563 1728 ntBASIC21.17■□□□□ 0.98
SCAPERQ9BY12 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SCAPERQ9BY12 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 AL121949.3-201ENST00000406684 385 ntBASIC21.16■□□□□ 0.98
SCAPERQ9BY12 AL136084.1-201ENST00000449172 318 ntBASIC21.16■□□□□ 0.98
SCAPERQ9BY12 VDAC1P11-201ENST00000458323 852 ntBASIC21.16■□□□□ 0.98
SCAPERQ9BY12 CD81-209ENST00000492627 886 ntTSL 3 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 URB1-AS1-201ENST00000534991 831 ntBASIC21.16■□□□□ 0.98
SCAPERQ9BY12 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 AC005746.3-201ENST00000614751 393 ntBASIC21.16■□□□□ 0.98
SCAPERQ9BY12 AC245369.7-201ENST00000631386 350 ntBASIC21.16■□□□□ 0.98
SCAPERQ9BY12 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SCAPERQ9BY12 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC21.15■□□□□ 0.98
SCAPERQ9BY12 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC21.15■□□□□ 0.98
SCAPERQ9BY12 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCAPERQ9BY12 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCAPERQ9BY12 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SCAPERQ9BY12 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SCAPERQ9BY12 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCAPERQ9BY12 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SCAPERQ9BY12 DKKL1P1-201ENST00000400550 698 ntBASIC21.15■□□□□ 0.98
SCAPERQ9BY12 RPL18AP16-201ENST00000424057 531 ntBASIC21.15■□□□□ 0.98
SCAPERQ9BY12 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms