Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
Trub1Q8C0D0 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Trub1Q8C0D0 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Trub1Q8C0D0 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Trub1Q8C0D0 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC11.7□□□□□ -0.54
Trub1Q8C0D0 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gm29245-201ENSMUST00000187332 1416 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gm21998-201ENSMUST00000117552 1308 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Snord17-201ENSMUST00000104526 238 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gm12218-201ENSMUST00000117666 399 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gm9062-201ENSMUST00000117712 727 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Mup-ps29-201ENSMUST00000122281 202 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gm21778-201ENSMUST00000178779 471 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Mrip-ps-201ENSMUST00000184613 940 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 CT025602.2-201ENSMUST00000226553 772 ntBASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Trpm7-202ENSMUST00000103224 7107 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Trub1Q8C0D0 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm38140-201ENSMUST00000193617 2755 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Fam83a-202ENSMUST00000160942 2876 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm6335-201ENSMUST00000118081 1194 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm7816-201ENSMUST00000119884 1194 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm15542-201ENSMUST00000121585 1194 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm25492-201ENSMUST00000157383 129 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm4654-201ENSMUST00000183305 982 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Ighv5-11-201ENSMUST00000193354 371 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm43186-201ENSMUST00000198130 824 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm21358-201ENSMUST00000191645 1659 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Gm9035-201ENSMUST00000218318 1697 ntBASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC11.68□□□□□ -0.54
Trub1Q8C0D0 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms