Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rnf43Q5NCP0 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Gm26571-201ENSMUST00000181399 666 ntBASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 AC115037.1-201ENSMUST00000223391 2173 ntBASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rnf43Q5NCP0 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf43Q5NCP0 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf43Q5NCP0 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf43Q5NCP0 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf43Q5NCP0 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf43Q5NCP0 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf43Q5NCP0 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf43Q5NCP0 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf43Q5NCP0 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rnf43Q5NCP0 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf43Q5NCP0 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf43Q5NCP0 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf43Q5NCP0 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rnf43Q5NCP0 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
Rnf43Q5NCP0 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf43Q5NCP0 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf43Q5NCP0 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf43Q5NCP0 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rnf43Q5NCP0 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf43Q5NCP0 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf43Q5NCP0 Gm42569-201ENSMUST00000200539 472 ntBASIC20.73■□□□□ 0.91
Rnf43Q5NCP0 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.73■□□□□ 0.91
Rnf43Q5NCP0 Spcs1-207ENSMUST00000228767 1008 ntBASIC20.73■□□□□ 0.91
Rnf43Q5NCP0 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rnf43Q5NCP0 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf43Q5NCP0 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf43Q5NCP0 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf43Q5NCP0 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.72■□□□□ 0.91
Rnf43Q5NCP0 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.72■□□□□ 0.91
Rnf43Q5NCP0 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.72■□□□□ 0.91
Rnf43Q5NCP0 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Rnf43Q5NCP0 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf43Q5NCP0 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Rnf43Q5NCP0 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rnf43Q5NCP0 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Rnf43Q5NCP0 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf43Q5NCP0 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Rnf43Q5NCP0 Gm42642-201ENSMUST00000200683 355 ntBASIC20.71■□□□□ 0.91
Rnf43Q5NCP0 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf43Q5NCP0 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf43Q5NCP0 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.71■□□□□ 0.91
Rnf43Q5NCP0 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rnf43Q5NCP0 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.7■□□□□ 0.91
Rnf43Q5NCP0 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rnf43Q5NCP0 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rnf43Q5NCP0 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
Rnf43Q5NCP0 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Rnf43Q5NCP0 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rnf43Q5NCP0 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.7■□□□□ 0.9
Rnf43Q5NCP0 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 Smad6-203ENSMUST00000179458 273 ntBASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rnf43Q5NCP0 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.68■□□□□ 0.9
Rnf43Q5NCP0 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.68■□□□□ 0.9
Rnf43Q5NCP0 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC20.68■□□□□ 0.9
Rnf43Q5NCP0 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf43Q5NCP0 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf43Q5NCP0 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf43Q5NCP0 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rnf43Q5NCP0 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.67■□□□□ 0.9
Rnf43Q5NCP0 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rnf43Q5NCP0 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Rnf43Q5NCP0 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rnf43Q5NCP0 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Rnf43Q5NCP0 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rnf43Q5NCP0 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms