Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
Col28a1Q2UY11 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col28a1Q2UY11 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col28a1Q2UY11 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col28a1Q2UY11 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col28a1Q2UY11 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC19.65■□□□□ 0.74
Col28a1Q2UY11 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col28a1Q2UY11 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.65■□□□□ 0.74
Col28a1Q2UY11 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.65■□□□□ 0.74
Col28a1Q2UY11 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col28a1Q2UY11 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Col28a1Q2UY11 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col28a1Q2UY11 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Col28a1Q2UY11 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col28a1Q2UY11 Gm14117-201ENSMUST00000122417 843 ntBASIC19.64■□□□□ 0.73
Col28a1Q2UY11 Gm45102-201ENSMUST00000207427 857 ntBASIC19.64■□□□□ 0.73
Col28a1Q2UY11 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Col28a1Q2UY11 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col28a1Q2UY11 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col28a1Q2UY11 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Col28a1Q2UY11 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Col28a1Q2UY11 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col28a1Q2UY11 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col28a1Q2UY11 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col28a1Q2UY11 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col28a1Q2UY11 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col28a1Q2UY11 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col28a1Q2UY11 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col28a1Q2UY11 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col28a1Q2UY11 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Col28a1Q2UY11 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col28a1Q2UY11 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col28a1Q2UY11 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col28a1Q2UY11 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col28a1Q2UY11 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.59■□□□□ 0.73
Col28a1Q2UY11 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col28a1Q2UY11 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col28a1Q2UY11 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col28a1Q2UY11 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col28a1Q2UY11 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col28a1Q2UY11 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col28a1Q2UY11 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Col28a1Q2UY11 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col28a1Q2UY11 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.58■□□□□ 0.72
Col28a1Q2UY11 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms