Protein–RNA interactions for Protein: P22518

Clk1, Dual specificity protein kinase CLK1, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk1P22518 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Clk1P22518 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.73■□□□□ 0.59
Clk1P22518 Gm7417-201ENSMUST00000192950 473 ntBASIC18.73■□□□□ 0.59
Clk1P22518 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.73■□□□□ 0.59
Clk1P22518 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk1P22518 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk1P22518 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clk1P22518 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk1P22518 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC18.72■□□□□ 0.59
Clk1P22518 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk1P22518 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clk1P22518 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clk1P22518 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.72■□□□□ 0.59
Clk1P22518 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk1P22518 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk1P22518 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk1P22518 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk1P22518 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Clk1P22518 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Clk1P22518 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk1P22518 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Clk1P22518 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk1P22518 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.71■□□□□ 0.59
Clk1P22518 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk1P22518 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Clk1P22518 Gm32051-202ENSMUST00000197905 2385 ntBASIC18.71■□□□□ 0.59
Clk1P22518 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk1P22518 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk1P22518 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk1P22518 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Clk1P22518 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Clk1P22518 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.7■□□□□ 0.58
Clk1P22518 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.7■□□□□ 0.58
Clk1P22518 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk1P22518 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC18.7■□□□□ 0.58
Clk1P22518 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk1P22518 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Clk1P22518 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.69■□□□□ 0.58
Clk1P22518 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC18.69■□□□□ 0.58
Clk1P22518 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Clk1P22518 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Clk1P22518 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk1P22518 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk1P22518 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Clk1P22518 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC18.68■□□□□ 0.58
Clk1P22518 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Clk1P22518 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.68■□□□□ 0.58
Clk1P22518 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk1P22518 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk1P22518 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk1P22518 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Clk1P22518 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk1P22518 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Clk1P22518 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.67■□□□□ 0.58
Clk1P22518 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk1P22518 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Clk1P22518 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.67■□□□□ 0.58
Clk1P22518 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk1P22518 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk1P22518 Etf1-202ENSMUST00000180351 108 ntBASIC18.67■□□□□ 0.58
Clk1P22518 Gm45102-201ENSMUST00000207427 857 ntBASIC18.67■□□□□ 0.58
Clk1P22518 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC18.67■□□□□ 0.58
Clk1P22518 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk1P22518 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk1P22518 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clk1P22518 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clk1P22518 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Clk1P22518 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Clk1P22518 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clk1P22518 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Clk1P22518 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clk1P22518 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clk1P22518 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Clk1P22518 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clk1P22518 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clk1P22518 Kdm3b-204ENSMUST00000224715 2032 ntBASIC18.66■□□□□ 0.58
Clk1P22518 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Clk1P22518 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms