Protein–RNA interactions for Protein: P08122

Col4a2, Collagen alpha-2(IV) chain, mousemouse

Predictions only

Length 1,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a2P08122 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col4a2P08122 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col4a2P08122 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col4a2P08122 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col4a2P08122 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.31■□□□□ 0.68
Col4a2P08122 AC099934.2-201ENSMUST00000196389 70 ntBASIC19.31■□□□□ 0.68
Col4a2P08122 AC156953.1-201ENSMUST00000196953 70 ntBASIC19.31■□□□□ 0.68
Col4a2P08122 AC157822.2-201ENSMUST00000200291 70 ntBASIC19.31■□□□□ 0.68
Col4a2P08122 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Col4a2P08122 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Col4a2P08122 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col4a2P08122 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col4a2P08122 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col4a2P08122 Gm27405-201ENSMUST00000184201 112 ntBASIC19.3■□□□□ 0.68
Col4a2P08122 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a2P08122 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a2P08122 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC19.29■□□□□ 0.68
Col4a2P08122 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.29■□□□□ 0.68
Col4a2P08122 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a2P08122 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a2P08122 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a2P08122 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a2P08122 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a2P08122 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a2P08122 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.28■□□□□ 0.68
Col4a2P08122 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Col4a2P08122 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a2P08122 Gm37179-201ENSMUST00000194862 823 ntBASIC19.28■□□□□ 0.68
Col4a2P08122 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a2P08122 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.28■□□□□ 0.68
Col4a2P08122 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a2P08122 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a2P08122 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a2P08122 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a2P08122 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a2P08122 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a2P08122 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a2P08122 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a2P08122 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a2P08122 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.27■□□□□ 0.68
Col4a2P08122 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col4a2P08122 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col4a2P08122 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
Col4a2P08122 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a2P08122 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
Col4a2P08122 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a2P08122 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a2P08122 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a2P08122 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a2P08122 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a2P08122 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Col4a2P08122 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a2P08122 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a2P08122 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a2P08122 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.25■□□□□ 0.67
Col4a2P08122 Gm40848-201ENSMUST00000221998 324 ntBASIC19.25■□□□□ 0.67
Col4a2P08122 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a2P08122 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Col4a2P08122 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a2P08122 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Col4a2P08122 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC19.25■□□□□ 0.67
Col4a2P08122 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a2P08122 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a2P08122 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a2P08122 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a2P08122 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a2P08122 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Col4a2P08122 Gm43060-201ENSMUST00000200621 289 ntBASIC19.24■□□□□ 0.67
Col4a2P08122 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a2P08122 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.24■□□□□ 0.67
Col4a2P08122 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Col4a2P08122 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
Col4a2P08122 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a2P08122 AC166356.1-201ENSMUST00000228236 1426 ntBASIC19.24■□□□□ 0.67
Col4a2P08122 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a2P08122 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a2P08122 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a2P08122 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a2P08122 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Gm27011-201ENSMUST00000182352 972 ntBASIC19.22■□□□□ 0.67
Col4a2P08122 Gm42569-201ENSMUST00000200539 472 ntBASIC19.22■□□□□ 0.67
Col4a2P08122 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC19.22■□□□□ 0.67
Col4a2P08122 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a2P08122 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a2P08122 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a2P08122 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a2P08122 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a2P08122 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a2P08122 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms