Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cldn1O88551 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cldn1O88551 CT025689.6-201ENSMUST00000224991 1104 ntBASIC17.37■□□□□ 0.37
Cldn1O88551 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cldn1O88551 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cldn1O88551 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Cldn1O88551 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cldn1O88551 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cldn1O88551 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Cldn1O88551 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cldn1O88551 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Gm42642-201ENSMUST00000200683 355 ntBASIC17.36■□□□□ 0.37
Cldn1O88551 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC17.36■□□□□ 0.37
Cldn1O88551 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC17.36■□□□□ 0.37
Cldn1O88551 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cldn1O88551 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Cldn1O88551 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Cldn1O88551 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cldn1O88551 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cldn1O88551 Gm10849-201ENSMUST00000100397 618 ntBASIC17.35■□□□□ 0.37
Cldn1O88551 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cldn1O88551 Gm26833-201ENSMUST00000180899 440 ntBASIC17.35■□□□□ 0.37
Cldn1O88551 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cldn1O88551 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cldn1O88551 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cldn1O88551 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cldn1O88551 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cldn1O88551 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cldn1O88551 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Cldn1O88551 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Cldn1O88551 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.34■□□□□ 0.37
Cldn1O88551 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cldn1O88551 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cldn1O88551 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Cldn1O88551 Gm43060-201ENSMUST00000200621 289 ntBASIC17.34■□□□□ 0.37
Cldn1O88551 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC17.34■□□□□ 0.37
Cldn1O88551 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cldn1O88551 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Cldn1O88551 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cldn1O88551 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
Cldn1O88551 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cldn1O88551 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.33■□□□□ 0.36
Cldn1O88551 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.33■□□□□ 0.36
Cldn1O88551 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.33■□□□□ 0.36
Cldn1O88551 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cldn1O88551 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.36
Cldn1O88551 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cldn1O88551 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cldn1O88551 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cldn1O88551 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cldn1O88551 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cldn1O88551 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cldn1O88551 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.32■□□□□ 0.36
Cldn1O88551 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cldn1O88551 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Cldn1O88551 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cldn1O88551 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Cldn1O88551 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.31■□□□□ 0.36
Cldn1O88551 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cldn1O88551 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC17.31■□□□□ 0.36
Cldn1O88551 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cldn1O88551 Gm43759-201ENSMUST00000196925 1261 ntBASIC17.31■□□□□ 0.36
Cldn1O88551 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cldn1O88551 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cldn1O88551 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
Cldn1O88551 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Cldn1O88551 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC17.31■□□□□ 0.36
Cldn1O88551 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cldn1O88551 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cldn1O88551 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC17.3■□□□□ 0.36
Cldn1O88551 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cldn1O88551 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cldn1O88551 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Cldn1O88551 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cldn1O88551 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cldn1O88551 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cldn1O88551 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
Cldn1O88551 Gm4430-201ENSMUST00000192413 1943 ntBASIC17.3■□□□□ 0.36
Cldn1O88551 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC17.3■□□□□ 0.36
Cldn1O88551 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cldn1O88551 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Cldn1O88551 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cldn1O88551 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cldn1O88551 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cldn1O88551 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cldn1O88551 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Cldn1O88551 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cldn1O88551 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Cldn1O88551 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cldn1O88551 Gm7160-202ENSMUST00000188519 1027 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms