Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC12.62□□□□□ -0.39
Col6a1Q04857 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Mapk1ip1-201ENSMUST00000075667 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Col6a1Q04857 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm8899-201ENSMUST00000214635 1332 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm14034-201ENSMUST00000120147 551 ntBASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm25830-201ENSMUST00000158923 132 ntBASIC12.61□□□□□ -0.39
Col6a1Q04857 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm24954-201ENSMUST00000178831 110 ntBASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm7741-201ENSMUST00000181445 989 ntBASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm7985-201ENSMUST00000183329 981 ntBASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm7504-201ENSMUST00000201449 424 ntBASIC12.61□□□□□ -0.39
Col6a1Q04857 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC12.61□□□□□ -0.39
Col6a1Q04857 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC12.61□□□□□ -0.39
Col6a1Q04857 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 AC158392.3-201ENSMUST00000224271 1284 ntBASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm26670-202ENSMUST00000226862 340 ntBASIC12.61□□□□□ -0.39
Col6a1Q04857 AC164437.3-201ENSMUST00000228323 347 ntBASIC12.61□□□□□ -0.39
Col6a1Q04857 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC12.61□□□□□ -0.39
Col6a1Q04857 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Cast-212ENSMUST00000223309 1529 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Slc40a1-201ENSMUST00000027137 3370 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Col6a1Q04857 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC12.61□□□□□ -0.39
Col6a1Q04857 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Col6a1Q04857 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Col6a1Q04857 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Col6a1Q04857 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC12.6□□□□□ -0.39
Col6a1Q04857 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Gm16030-201ENSMUST00000159098 603 ntBASIC12.6□□□□□ -0.39
Col6a1Q04857 Gm34379-201ENSMUST00000195036 290 ntBASIC12.6□□□□□ -0.39
Col6a1Q04857 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC12.6□□□□□ -0.39
Col6a1Q04857 Acy1-211ENSMUST00000216400 1030 ntTSL 5 BASIC12.6□□□□□ -0.39
Col6a1Q04857 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Col6a1Q04857 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Col6a1Q04857 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms