Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm21964-201ENSMUST00000178785 936 ntTSL 5 BASIC11.82□□□□□ -0.52
Sox9Q04887 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Gsdmcl2-202ENSMUST00000185391 796 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Zcwpw2-203ENSMUST00000187803 372 ntBASIC11.82□□□□□ -0.52
Sox9Q04887 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC11.82□□□□□ -0.52
Sox9Q04887 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC11.82□□□□□ -0.52
Sox9Q04887 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC11.82□□□□□ -0.52
Sox9Q04887 AC153929.1-201ENSMUST00000219009 303 ntBASIC11.82□□□□□ -0.52
Sox9Q04887 AC134869.4-202ENSMUST00000224350 837 ntBASIC11.82□□□□□ -0.52
Sox9Q04887 4930546C10Rik-201ENSMUST00000025428 363 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sox9Q04887 Mt4-201ENSMUST00000034207 398 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Sox9Q04887 Olfr71-201ENSMUST00000055401 939 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Sox9Q04887 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sox9Q04887 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC11.82□□□□□ -0.52
Sox9Q04887 Gm31138-201ENSMUST00000212296 1705 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Sox9Q04887 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Sox9Q04887 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC11.82□□□□□ -0.52
Sox9Q04887 Kcne3-202ENSMUST00000170954 1315 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Ppp2r2cos-201ENSMUST00000152862 1491 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC11.82□□□□□ -0.52
Sox9Q04887 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Sox9Q04887 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC11.81□□□□□ -0.52
Sox9Q04887 Tipin-205ENSMUST00000216594 1841 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC11.81□□□□□ -0.52
Sox9Q04887 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Sox9Q04887 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 AC166361.2-201ENSMUST00000219269 1415 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Cdk1-202ENSMUST00000119827 1253 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Sox9Q04887 Gm8152-201ENSMUST00000120842 637 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 Gm5529-201ENSMUST00000165691 891 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC11.81□□□□□ -0.52
Sox9Q04887 Cd9-ps-201ENSMUST00000174687 650 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 Gm26957-201ENSMUST00000182645 977 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 Mir6359-201ENSMUST00000183668 81 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 Gm27440-201ENSMUST00000184785 107 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 Gm29642-201ENSMUST00000186170 921 ntTSL 2 BASIC11.81□□□□□ -0.52
Sox9Q04887 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC11.81□□□□□ -0.52
Sox9Q04887 Gm8226-201ENSMUST00000190511 798 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Gm45040-201ENSMUST00000207742 578 ntTSL 3 BASIC11.81□□□□□ -0.52
Sox9Q04887 Ccdc114-205ENSMUST00000211367 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC11.81□□□□□ -0.52
Sox9Q04887 Gm9102-201ENSMUST00000219250 465 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 AC154477.1-201ENSMUST00000226515 773 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 AC137842.2-201ENSMUST00000227734 797 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 Gm6304-201ENSMUST00000096579 447 ntBASIC11.81□□□□□ -0.52
Sox9Q04887 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
Sox9Q04887 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC11.81□□□□□ -0.52
Sox9Q04887 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Sox9Q04887 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
Sox9Q04887 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC11.81□□□□□ -0.52
Sox9Q04887 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Sox9Q04887 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Sox9Q04887 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 AC154354.1-203ENSMUST00000225565 1364 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Il34-201ENSMUST00000076846 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Gm44758-201ENSMUST00000206096 2068 ntBASIC11.8□□□□□ -0.52
Sox9Q04887 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Sox9Q04887 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms