Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox9Q04887 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC11.87□□□□□ -0.51
Sox9Q04887 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC11.87□□□□□ -0.51
Sox9Q04887 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox9Q04887 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sox9Q04887 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
Sox9Q04887 Gm8146-201ENSMUST00000192106 1847 ntBASIC11.86□□□□□ -0.51
Sox9Q04887 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sox9Q04887 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Gm23132-201ENSMUST00000104254 132 ntBASIC11.86□□□□□ -0.51
Sox9Q04887 1700025C18Rik-201ENSMUST00000109304 702 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sox9Q04887 Gm16069-201ENSMUST00000131146 545 ntTSL 3 BASIC11.86□□□□□ -0.51
Sox9Q04887 Auts2-216ENSMUST00000185450 144 ntTSL 5 BASIC11.86□□□□□ -0.51
Sox9Q04887 5033404E19Rik-202ENSMUST00000194748 1065 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Ighv1-70-201ENSMUST00000196509 351 ntBASIC11.86□□□□□ -0.51
Sox9Q04887 Zfp655-204ENSMUST00000199003 601 ntTSL 2 BASIC11.86□□□□□ -0.51
Sox9Q04887 Gm17936-201ENSMUST00000199413 988 ntBASIC11.86□□□□□ -0.51
Sox9Q04887 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 AC134248.1-201ENSMUST00000216113 1176 ntBASIC11.86□□□□□ -0.51
Sox9Q04887 AC107752.1-201ENSMUST00000219362 469 ntBASIC11.86□□□□□ -0.51
Sox9Q04887 Gm32872-201ENSMUST00000220037 205 ntTSL 3 BASIC11.86□□□□□ -0.51
Sox9Q04887 AC115304.2-201ENSMUST00000226399 332 ntBASIC11.86□□□□□ -0.51
Sox9Q04887 Nnmt-201ENSMUST00000034808 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Sox9Q04887 Olfr1121-201ENSMUST00000062555 945 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Sox9Q04887 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sox9Q04887 AC116503.1-201ENSMUST00000215445 2192 ntBASIC11.86□□□□□ -0.51
Sox9Q04887 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sox9Q04887 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC11.86□□□□□ -0.51
Sox9Q04887 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sox9Q04887 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC11.86□□□□□ -0.51
Sox9Q04887 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox9Q04887 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
Sox9Q04887 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC11.85□□□□□ -0.51
Sox9Q04887 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Psmc1-201ENSMUST00000021595 1591 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Smap1-202ENSMUST00000129254 1365 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Gm12129-201ENSMUST00000120104 1147 ntBASIC11.85□□□□□ -0.51
Sox9Q04887 Gm15886-201ENSMUST00000123155 1250 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Gm22388-201ENSMUST00000158194 248 ntBASIC11.85□□□□□ -0.51
Sox9Q04887 Gm31274-201ENSMUST00000197356 229 ntBASIC11.85□□□□□ -0.51
Sox9Q04887 4930573C15Rik-201ENSMUST00000197707 777 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Mrpl23-207ENSMUST00000210803 590 ntTSL 3 BASIC11.85□□□□□ -0.51
Sox9Q04887 Tmod3-205ENSMUST00000215821 898 ntTSL 3 BASIC11.85□□□□□ -0.51
Sox9Q04887 AC103672.1-201ENSMUST00000227502 365 ntBASIC11.85□□□□□ -0.51
Sox9Q04887 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Sox9Q04887 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC11.85□□□□□ -0.51
Sox9Q04887 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC11.85□□□□□ -0.51
Sox9Q04887 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC11.85□□□□□ -0.51
Sox9Q04887 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sox9Q04887 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Sox9Q04887 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Txndc9-208ENSMUST00000195247 1699 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC11.84□□□□□ -0.51
Sox9Q04887 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Sox9Q04887 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Gm6024-201ENSMUST00000117850 1558 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Gm38376-201ENSMUST00000195493 2253 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Sox9Q04887 Prss23os-202ENSMUST00000179361 1362 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Gm42970-201ENSMUST00000196407 1352 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Gm12470-201ENSMUST00000117239 1049 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Gm15746-201ENSMUST00000120684 1027 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Tsc22d3-204ENSMUST00000123898 952 ntTSL 5 BASIC11.84□□□□□ -0.51
Sox9Q04887 Gm15658-201ENSMUST00000148293 574 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms