Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Sox3P53784 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
Sox3P53784 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Sox3P53784 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Gm19680-201ENSMUST00000095050 1513 ntBASIC11.04□□□□□ -0.64
Sox3P53784 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC11.04□□□□□ -0.64
Sox3P53784 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Sox3P53784 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Sox3P53784 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
Sox3P53784 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Sox3P53784 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Sox3P53784 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Gm11979-201ENSMUST00000119629 743 ntBASIC11.03□□□□□ -0.64
Sox3P53784 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Sox3P53784 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC11.03□□□□□ -0.64
Sox3P53784 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC11.03□□□□□ -0.64
Sox3P53784 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Gm8531-201ENSMUST00000188319 893 ntBASIC11.03□□□□□ -0.64
Sox3P53784 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Gm44421-201ENSMUST00000205064 1221 ntBASIC11.03□□□□□ -0.64
Sox3P53784 Gm44882-201ENSMUST00000205702 802 ntBASIC11.03□□□□□ -0.64
Sox3P53784 AC153954.1-201ENSMUST00000216959 255 ntBASIC11.03□□□□□ -0.64
Sox3P53784 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC11.03□□□□□ -0.64
Sox3P53784 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Sox3P53784 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Sox3P53784 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Sox3P53784 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Sox3P53784 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC11.03□□□□□ -0.64
Sox3P53784 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Sox3P53784 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.64
Sox3P53784 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sox3P53784 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Sox3P53784 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.64
Sox3P53784 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sox3P53784 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sox3P53784 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sox3P53784 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Sox3P53784 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Sox3P53784 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sox3P53784 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sox3P53784 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sox3P53784 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Sox3P53784 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sox3P53784 Gm26286-201ENSMUST00000104166 134 ntBASIC11.02□□□□□ -0.65
Sox3P53784 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sox3P53784 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC11.02□□□□□ -0.65
Sox3P53784 Gm12943-201ENSMUST00000119616 210 ntBASIC11.02□□□□□ -0.65
Sox3P53784 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Sox3P53784 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC11.02□□□□□ -0.65
Sox3P53784 Gm25604-201ENSMUST00000158359 133 ntBASIC11.02□□□□□ -0.65
Sox3P53784 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Sox3P53784 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Sox3P53784 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC11.02□□□□□ -0.65
Sox3P53784 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Sox3P53784 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC11.02□□□□□ -0.65
Sox3P53784 Gm18304-201ENSMUST00000189162 546 ntBASIC11.02□□□□□ -0.65
Sox3P53784 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC11.02□□□□□ -0.65
Sox3P53784 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC11.02□□□□□ -0.65
Sox3P53784 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC11.02□□□□□ -0.65
Sox3P53784 Ap3s1-202ENSMUST00000224622 978 ntBASIC11.02□□□□□ -0.65
Sox3P53784 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms