Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm18615-201ENSMUST00000222919 1031 ntBASIC11.35□□□□□ -0.59
Lima1Q9ERG0 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Rbbp5-202ENSMUST00000187505 1977 ntTSL 5 BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Gm44369-201ENSMUST00000204543 2175 ntBASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lima1Q9ERG0 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Adgrv1-214ENSMUST00000224088 1492 ntBASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gm20482-202ENSMUST00000174729 825 ntBASIC11.34□□□□□ -0.59
Lima1Q9ERG0 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gm6439-201ENSMUST00000199849 862 ntBASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gm45598-202ENSMUST00000210719 986 ntBASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gm13097-201ENSMUST00000210722 397 ntBASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gm37600-201ENSMUST00000193764 3292 ntBASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Lima1Q9ERG0 Gm43127-201ENSMUST00000195890 2789 ntBASIC11.33□□□□□ -0.59
Lima1Q9ERG0 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Gm19327-201ENSMUST00000220651 3271 ntBASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Recql-202ENSMUST00000100832 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 AA914427-201ENSMUST00000193194 1166 ntBASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Gm38317-201ENSMUST00000195564 343 ntBASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Rprl1-202ENSMUST00000198476 238 ntBASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Esr2-205ENSMUST00000218621 3342 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lima1Q9ERG0 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms