Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.77□□□□□ -0.36
Col6a1Q04857 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a1Q04857 Gm44831-201ENSMUST00000208469 2989 ntBASIC12.77□□□□□ -0.36
Col6a1Q04857 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm11500-201ENSMUST00000118237 601 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm6322-201ENSMUST00000118789 1004 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm28038-201ENSMUST00000143119 378 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Aknaos-201ENSMUST00000144095 1104 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm25998-201ENSMUST00000175397 53 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm18801-201ENSMUST00000186616 536 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm28833-201ENSMUST00000189671 559 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 Mrpl30-207ENSMUST00000195373 587 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Col6a1Q04857 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm43275-201ENSMUST00000202053 1020 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Ftl1-204ENSMUST00000210864 503 ntTSL 5 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Olfr692-202ENSMUST00000217827 1126 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm40761-201ENSMUST00000219123 1153 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Gpr137b-ps-202ENSMUST00000220647 1159 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Gm23105-201ENSMUST00000083719 134 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 Uqcc3-201ENSMUST00000096253 829 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Olfr692-201ENSMUST00000098152 1126 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.77□□□□□ -0.37
Col6a1Q04857 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 AC130823.1-201ENSMUST00000228929 1549 ntBASIC12.77□□□□□ -0.37
Col6a1Q04857 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a1Q04857 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Gm44260-201ENSMUST00000204946 2094 ntBASIC12.76□□□□□ -0.37
Col6a1Q04857 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Gm11783-201ENSMUST00000119549 885 ntBASIC12.76□□□□□ -0.37
Col6a1Q04857 Gm14993-201ENSMUST00000121180 164 ntBASIC12.76□□□□□ -0.37
Col6a1Q04857 C1qtnf7-202ENSMUST00000121872 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Col6a1Q04857 Gm12069-201ENSMUST00000145127 806 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Col6a1Q04857 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
Col6a1Q04857 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
Col6a1Q04857 Gm17192-201ENSMUST00000169031 511 ntBASIC12.76□□□□□ -0.37
Col6a1Q04857 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Mir6941-201ENSMUST00000184711 59 ntBASIC12.76□□□□□ -0.37
Col6a1Q04857 Gm37826-201ENSMUST00000195329 322 ntBASIC12.76□□□□□ -0.37
Col6a1Q04857 Gm6423-201ENSMUST00000204315 934 ntBASIC12.76□□□□□ -0.37
Col6a1Q04857 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Col6a1Q04857 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Col6a1Q04857 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Col6a1Q04857 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.75□□□□□ -0.37
Col6a1Q04857 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Arhgef3-204ENSMUST00000225949 3198 ntBASIC12.75□□□□□ -0.37
Col6a1Q04857 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Col6a1Q04857 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Col6a1Q04857 Gm22594-201ENSMUST00000104251 130 ntBASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms