Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Smc1aQ9CU62 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Gm45342-201ENSMUST00000210903 1363 ntBASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Ptpn11-201ENSMUST00000054547 5535 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Mir680-2-201ENSMUST00000102163 110 ntBASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Gm23251-201ENSMUST00000103773 110 ntBASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Gm25881-201ENSMUST00000157783 103 ntBASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Ighv4-2-201ENSMUST00000192975 362 ntBASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Gm1821-202ENSMUST00000227415 750 ntBASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Smc1aQ9CU62 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC12.96□□□□□ -0.34
Smc1aQ9CU62 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC12.96□□□□□ -0.34
Smc1aQ9CU62 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Smc1aQ9CU62 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Smc1aQ9CU62 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Smc1aQ9CU62 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Smc1aQ9CU62 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Smc1aQ9CU62 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Smc1aQ9CU62 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
Smc1aQ9CU62 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Gm13812-201ENSMUST00000118061 1347 ntBASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Gm13810-201ENSMUST00000118584 1347 ntBASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Gm12196-201ENSMUST00000120954 262 ntBASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Gm12208-201ENSMUST00000122004 163 ntBASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 AC154849.4-201ENSMUST00000224868 365 ntBASIC12.95□□□□□ -0.34
Smc1aQ9CU62 AC135469.1-201ENSMUST00000225984 772 ntBASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 CT025681.1-201ENSMUST00000225453 1855 ntBASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Smc1aQ9CU62 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Gm37600-201ENSMUST00000193764 3292 ntBASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Smc1aQ9CU62 Acad9-201ENSMUST00000011492 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 64.8 ms