Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.81□□□□□ -0.36
Col6a1Q04857 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm12712-201ENSMUST00000120676 801 ntBASIC12.81□□□□□ -0.36
Col6a1Q04857 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC12.81□□□□□ -0.36
Col6a1Q04857 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm26982-201ENSMUST00000182250 1151 ntBASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm9916-201ENSMUST00000192943 1228 ntBASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm38151-201ENSMUST00000195085 289 ntBASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm18561-201ENSMUST00000206027 804 ntBASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm45609-206ENSMUST00000210176 1023 ntTSL 5 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm13539-202ENSMUST00000211245 552 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 AC158388.3-202ENSMUST00000225517 775 ntBASIC12.81□□□□□ -0.36
Col6a1Q04857 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Col6a1Q04857 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Col6a1Q04857 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Etv1-205ENSMUST00000160856 1474 ntTSL 5 BASIC12.8□□□□□ -0.36
Col6a1Q04857 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm18227-201ENSMUST00000211082 1468 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm42943-201ENSMUST00000199676 3242 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm15615-201ENSMUST00000118876 198 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm9089-201ENSMUST00000122027 526 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm12406-201ENSMUST00000155382 697 ntTSL 3 BASIC12.8□□□□□ -0.36
Col6a1Q04857 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm17070-201ENSMUST00000170463 784 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC12.8□□□□□ -0.36
Col6a1Q04857 AC238811.4-201ENSMUST00000178019 1246 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 AC238940.3-201ENSMUST00000178830 1246 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Ighv1-2-201ENSMUST00000195325 378 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm8436-201ENSMUST00000210152 1080 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 Gm5749-201ENSMUST00000210673 1090 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC12.8□□□□□ -0.36
Col6a1Q04857 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col6a1Q04857 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Col6a1Q04857 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 85.3 ms