Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cdc40Q9DC48 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.89■□□□□ 0.61
Cdc40Q9DC48 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cdc40Q9DC48 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.89■□□□□ 0.61
Cdc40Q9DC48 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.89■□□□□ 0.61
Cdc40Q9DC48 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Cdc40Q9DC48 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.89■□□□□ 0.61
Cdc40Q9DC48 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cdc40Q9DC48 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Gm21956-201ENSMUST00000179946 522 ntBASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdc40Q9DC48 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.87■□□□□ 0.61
Cdc40Q9DC48 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdc40Q9DC48 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.87■□□□□ 0.61
Cdc40Q9DC48 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdc40Q9DC48 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.87■□□□□ 0.61
Cdc40Q9DC48 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Cdc40Q9DC48 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdc40Q9DC48 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Cdc40Q9DC48 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdc40Q9DC48 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdc40Q9DC48 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.85■□□□□ 0.61
Cdc40Q9DC48 Gm12504-201ENSMUST00000120860 2231 ntBASIC18.85■□□□□ 0.61
Cdc40Q9DC48 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdc40Q9DC48 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Cdc40Q9DC48 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.85■□□□□ 0.61
Cdc40Q9DC48 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Gm12922-201ENSMUST00000120626 809 ntBASIC18.84■□□□□ 0.61
Cdc40Q9DC48 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdc40Q9DC48 Gm5913-201ENSMUST00000119397 1399 ntBASIC18.83■□□□□ 0.61
Cdc40Q9DC48 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cdc40Q9DC48 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdc40Q9DC48 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdc40Q9DC48 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdc40Q9DC48 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cdc40Q9DC48 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cdc40Q9DC48 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
Cdc40Q9DC48 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Cdc40Q9DC48 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cdc40Q9DC48 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdc40Q9DC48 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cdc40Q9DC48 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Cdc40Q9DC48 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 10.4 ms