Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lsm1Q8VC85 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Gm43566-201ENSMUST00000196851 808 ntBASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Lsm1Q8VC85 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lsm1Q8VC85 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Lsm1Q8VC85 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lsm1Q8VC85 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.62■□□□□ 0.73
Lsm1Q8VC85 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lsm1Q8VC85 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lsm1Q8VC85 Gm34220-201ENSMUST00000223001 2709 ntBASIC19.62■□□□□ 0.73
Lsm1Q8VC85 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
Lsm1Q8VC85 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lsm1Q8VC85 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lsm1Q8VC85 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lsm1Q8VC85 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Lsm1Q8VC85 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Lsm1Q8VC85 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Lsm1Q8VC85 Gm5921-201ENSMUST00000075898 882 ntBASIC19.61■□□□□ 0.73
Lsm1Q8VC85 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lsm1Q8VC85 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lsm1Q8VC85 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lsm1Q8VC85 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.61■□□□□ 0.73
Lsm1Q8VC85 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lsm1Q8VC85 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lsm1Q8VC85 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lsm1Q8VC85 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.6■□□□□ 0.73
Lsm1Q8VC85 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.6■□□□□ 0.73
Lsm1Q8VC85 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lsm1Q8VC85 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lsm1Q8VC85 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lsm1Q8VC85 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lsm1Q8VC85 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lsm1Q8VC85 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lsm1Q8VC85 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC19.59■□□□□ 0.73
Lsm1Q8VC85 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lsm1Q8VC85 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lsm1Q8VC85 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lsm1Q8VC85 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.58■□□□□ 0.73
Lsm1Q8VC85 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC19.58■□□□□ 0.73
Lsm1Q8VC85 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lsm1Q8VC85 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lsm1Q8VC85 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Lsm1Q8VC85 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Lsm1Q8VC85 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Lsm1Q8VC85 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Lsm1Q8VC85 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lsm1Q8VC85 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Lsm1Q8VC85 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lsm1Q8VC85 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Lsm1Q8VC85 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.56■□□□□ 0.72
Lsm1Q8VC85 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Lsm1Q8VC85 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lsm1Q8VC85 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.55■□□□□ 0.72
Lsm1Q8VC85 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.55■□□□□ 0.72
Lsm1Q8VC85 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lsm1Q8VC85 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.55■□□□□ 0.72
Lsm1Q8VC85 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lsm1Q8VC85 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lsm1Q8VC85 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC19.54■□□□□ 0.72
Lsm1Q8VC85 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Lsm1Q8VC85 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC19.54■□□□□ 0.72
Lsm1Q8VC85 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.54■□□□□ 0.72
Lsm1Q8VC85 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Lsm1Q8VC85 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Lsm1Q8VC85 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms