Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ushbp1Q8R370 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ushbp1Q8R370 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ushbp1Q8R370 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Ushbp1Q8R370 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Gm12922-201ENSMUST00000120626 809 ntBASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Appbp2os-202ENSMUST00000206972 447 ntBASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Ushbp1Q8R370 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Ushbp1Q8R370 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Ushbp1Q8R370 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
Ushbp1Q8R370 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Ushbp1Q8R370 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Ushbp1Q8R370 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Ushbp1Q8R370 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC22.88■■□□□ 1.25
Ushbp1Q8R370 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Ushbp1Q8R370 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Ushbp1Q8R370 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ushbp1Q8R370 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ushbp1Q8R370 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ushbp1Q8R370 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ushbp1Q8R370 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ushbp1Q8R370 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ushbp1Q8R370 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ushbp1Q8R370 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ushbp1Q8R370 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
Ushbp1Q8R370 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC22.86■■□□□ 1.25
Ushbp1Q8R370 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
Ushbp1Q8R370 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC22.86■■□□□ 1.25
Ushbp1Q8R370 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC22.86■■□□□ 1.25
Ushbp1Q8R370 Gm10399-202ENSMUST00000202768 748 ntBASIC22.86■■□□□ 1.25
Ushbp1Q8R370 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Ushbp1Q8R370 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Ushbp1Q8R370 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
Ushbp1Q8R370 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Ushbp1Q8R370 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
Ushbp1Q8R370 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Ushbp1Q8R370 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Ushbp1Q8R370 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Ushbp1Q8R370 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
Ushbp1Q8R370 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Ushbp1Q8R370 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Ushbp1Q8R370 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC22.83■■□□□ 1.25
Ushbp1Q8R370 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Ushbp1Q8R370 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Ushbp1Q8R370 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC22.83■■□□□ 1.25
Ushbp1Q8R370 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Ushbp1Q8R370 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Ushbp1Q8R370 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Gm12821-201ENSMUST00000120022 600 ntBASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC22.82■■□□□ 1.24
Ushbp1Q8R370 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Ushbp1Q8R370 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
Ushbp1Q8R370 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC22.81■■□□□ 1.24
Ushbp1Q8R370 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Ushbp1Q8R370 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Ushbp1Q8R370 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Ushbp1Q8R370 Gm27454-201ENSMUST00000185090 204 ntBASIC22.81■■□□□ 1.24
Ushbp1Q8R370 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Ushbp1Q8R370 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Ushbp1Q8R370 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
Ushbp1Q8R370 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
Ushbp1Q8R370 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Ushbp1Q8R370 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Ushbp1Q8R370 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Ushbp1Q8R370 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Ushbp1Q8R370 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Ushbp1Q8R370 AC122428.2-201ENSMUST00000216321 1832 ntBASIC22.8■■□□□ 1.24
Ushbp1Q8R370 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Ushbp1Q8R370 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Ushbp1Q8R370 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Ushbp1Q8R370 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Ushbp1Q8R370 Gm4430-201ENSMUST00000192413 1943 ntBASIC22.79■■□□□ 1.24
Ushbp1Q8R370 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Ushbp1Q8R370 Hsf1-207ENSMUST00000228371 2102 ntBASIC22.79■■□□□ 1.24
Ushbp1Q8R370 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Ushbp1Q8R370 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Ushbp1Q8R370 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Ushbp1Q8R370 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
Ushbp1Q8R370 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Ushbp1Q8R370 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC22.78■■□□□ 1.24
Ushbp1Q8R370 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Ushbp1Q8R370 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms