Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ubp1Q811S7 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ubp1Q811S7 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Ubp1Q811S7 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ubp1Q811S7 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ubp1Q811S7 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.11■□□□□ 0.81
Ubp1Q811S7 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ubp1Q811S7 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ubp1Q811S7 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ubp1Q811S7 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.11■□□□□ 0.81
Ubp1Q811S7 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ubp1Q811S7 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.1■□□□□ 0.81
Ubp1Q811S7 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ubp1Q811S7 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.1■□□□□ 0.81
Ubp1Q811S7 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ubp1Q811S7 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ubp1Q811S7 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ubp1Q811S7 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ubp1Q811S7 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
Ubp1Q811S7 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ubp1Q811S7 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Ubp1Q811S7 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ubp1Q811S7 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ubp1Q811S7 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ubp1Q811S7 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.08■□□□□ 0.81
Ubp1Q811S7 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC20.08■□□□□ 0.81
Ubp1Q811S7 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ubp1Q811S7 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ubp1Q811S7 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ubp1Q811S7 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ubp1Q811S7 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ubp1Q811S7 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ubp1Q811S7 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ubp1Q811S7 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ubp1Q811S7 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ubp1Q811S7 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Ubp1Q811S7 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.07■□□□□ 0.8
Ubp1Q811S7 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ubp1Q811S7 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC20.06■□□□□ 0.8
Ubp1Q811S7 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubp1Q811S7 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubp1Q811S7 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ubp1Q811S7 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubp1Q811S7 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubp1Q811S7 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubp1Q811S7 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubp1Q811S7 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubp1Q811S7 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ubp1Q811S7 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Ubp1Q811S7 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ubp1Q811S7 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.03■□□□□ 0.8
Ubp1Q811S7 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Ubp1Q811S7 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Ubp1Q811S7 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
Ubp1Q811S7 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.03■□□□□ 0.8
Ubp1Q811S7 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ubp1Q811S7 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ubp1Q811S7 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ubp1Q811S7 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubp1Q811S7 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubp1Q811S7 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.02■□□□□ 0.8
Ubp1Q811S7 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.02■□□□□ 0.8
Ubp1Q811S7 Gm9870-201ENSMUST00000063874 645 ntBASIC20.02■□□□□ 0.8
Ubp1Q811S7 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubp1Q811S7 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubp1Q811S7 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubp1Q811S7 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ubp1Q811S7 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ubp1Q811S7 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ubp1Q811S7 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubp1Q811S7 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ubp1Q811S7 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.01■□□□□ 0.79
Ubp1Q811S7 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ubp1Q811S7 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Ubp1Q811S7 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC20.01■□□□□ 0.79
Ubp1Q811S7 Gm7143-201ENSMUST00000222811 859 ntBASIC20.01■□□□□ 0.79
Ubp1Q811S7 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubp1Q811S7 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
Ubp1Q811S7 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.01■□□□□ 0.79
Ubp1Q811S7 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubp1Q811S7 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubp1Q811S7 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ubp1Q811S7 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ubp1Q811S7 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC20■□□□□ 0.79
Ubp1Q811S7 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20■□□□□ 0.79
Ubp1Q811S7 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
Ubp1Q811S7 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 183.3 ms