Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdx1P18111 Gm4419-202ENSMUST00000226239 1431 ntBASIC16.28■□□□□ 0.2
Cdx1P18111 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC16.28■□□□□ 0.2
Cdx1P18111 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx1P18111 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx1P18111 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx1P18111 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cdx1P18111 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx1P18111 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx1P18111 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cdx1P18111 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx1P18111 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
Cdx1P18111 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC16.28■□□□□ 0.2
Cdx1P18111 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx1P18111 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cdx1P18111 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx1P18111 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Cdx1P18111 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx1P18111 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx1P18111 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx1P18111 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx1P18111 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cdx1P18111 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Cdx1P18111 Kdm3b-204ENSMUST00000224715 2032 ntBASIC16.27■□□□□ 0.2
Cdx1P18111 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Cdx1P18111 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdx1P18111 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdx1P18111 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdx1P18111 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC16.27■□□□□ 0.19
Cdx1P18111 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cdx1P18111 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx1P18111 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx1P18111 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Cdx1P18111 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC16.26■□□□□ 0.19
Cdx1P18111 Gm15546-201ENSMUST00000122095 826 ntBASIC16.26■□□□□ 0.19
Cdx1P18111 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
Cdx1P18111 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Cdx1P18111 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx1P18111 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx1P18111 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx1P18111 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx1P18111 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Cdx1P18111 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx1P18111 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Cdx1P18111 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Cdx1P18111 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Cdx1P18111 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Cdx1P18111 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdx1P18111 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Cdx1P18111 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx1P18111 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx1P18111 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Cdx1P18111 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx1P18111 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx1P18111 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Cdx1P18111 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx1P18111 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Cdx1P18111 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx1P18111 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Cdx1P18111 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC16.23■□□□□ 0.19
Cdx1P18111 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdx1P18111 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdx1P18111 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdx1P18111 Snhg20-203ENSMUST00000182811 2153 ntBASIC16.22■□□□□ 0.19
Cdx1P18111 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Cdx1P18111 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdx1P18111 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdx1P18111 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cdx1P18111 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC16.21■□□□□ 0.19
Cdx1P18111 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Cdx1P18111 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC16.21■□□□□ 0.19
Cdx1P18111 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cdx1P18111 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Cdx1P18111 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Cdx1P18111 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC16.21■□□□□ 0.19
Cdx1P18111 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cdx1P18111 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cdx1P18111 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cdx1P18111 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdx1P18111 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC16.2■□□□□ 0.18
Cdx1P18111 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC16.2■□□□□ 0.18
Cdx1P18111 Gm22567-201ENSMUST00000175542 342 ntBASIC16.2■□□□□ 0.18
Cdx1P18111 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdx1P18111 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Cdx1P18111 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cdx1P18111 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
Cdx1P18111 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdx1P18111 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdx1P18111 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Cdx1P18111 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdx1P18111 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cdx1P18111 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC16.19■□□□□ 0.18
Cdx1P18111 Gm5522-201ENSMUST00000189483 1242 ntBASIC16.19■□□□□ 0.18
Cdx1P18111 Gm43592-201ENSMUST00000196922 1165 ntBASIC16.19■□□□□ 0.18
Cdx1P18111 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC16.19■□□□□ 0.18
Cdx1P18111 AC117769.4-201ENSMUST00000225679 685 ntBASIC16.19■□□□□ 0.18
Cdx1P18111 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdx1P18111 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdx1P18111 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cdx1P18111 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms