Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Usp40Q8BWR4 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Usp40Q8BWR4 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
Usp40Q8BWR4 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Usp40Q8BWR4 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Usp40Q8BWR4 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Usp40Q8BWR4 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Gm43172-201ENSMUST00000202139 2137 ntBASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Gm8302-201ENSMUST00000119217 852 ntBASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Gm3329-201ENSMUST00000159873 556 ntBASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 AC124457.1-201ENSMUST00000198845 120 ntBASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Gm7082-201ENSMUST00000209880 969 ntBASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
Usp40Q8BWR4 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 C1qtnf7-202ENSMUST00000121872 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Gm9081-201ENSMUST00000182346 991 ntBASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Gm29164-201ENSMUST00000185454 1024 ntBASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Usp40Q8BWR4 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC15.8■□□□□ 0.12
Usp40Q8BWR4 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Gm12179-201ENSMUST00000118344 1272 ntBASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Gm6322-201ENSMUST00000118789 1004 ntBASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Gm15197-201ENSMUST00000120526 478 ntBASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Gm24248-201ENSMUST00000157321 322 ntBASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Gm19587-201ENSMUST00000191395 545 ntBASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Gm42913-201ENSMUST00000197936 1853 ntBASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Usp40Q8BWR4 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Usp40Q8BWR4 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms