Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 2610016A17Rik-201ENSMUST00000185211 474 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 2310034O05Rik-201ENSMUST00000185221 1107 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Gm4034-201ENSMUST00000187674 480 ntBASIC12.05□□□□□ -0.48
Sox9Q04887 Gm8197-202ENSMUST00000193422 934 ntBASIC12.05□□□□□ -0.48
Sox9Q04887 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC12.05□□□□□ -0.48
Sox9Q04887 Gm7238-201ENSMUST00000206467 973 ntBASIC12.05□□□□□ -0.48
Sox9Q04887 Gm17931-201ENSMUST00000208132 634 ntBASIC12.05□□□□□ -0.48
Sox9Q04887 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 AC140409.3-201ENSMUST00000215601 358 ntTSL 3 BASIC12.05□□□□□ -0.48
Sox9Q04887 Gm46224-201ENSMUST00000220221 1242 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 AC174797.2-201ENSMUST00000225835 165 ntBASIC12.05□□□□□ -0.48
Sox9Q04887 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Sox9Q04887 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Sox9Q04887 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Sox9Q04887 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Cog3-203ENSMUST00000227473 4197 ntBASIC12.05□□□□□ -0.48
Sox9Q04887 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.05□□□□□ -0.48
Sox9Q04887 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.05□□□□□ -0.48
Sox9Q04887 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Sox9Q04887 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox9Q04887 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Sox9Q04887 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Sox9Q04887 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Sox9Q04887 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC12.04□□□□□ -0.48
Sox9Q04887 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 S100a3-201ENSMUST00000001047 712 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Krt40-202ENSMUST00000107443 1080 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Gm15976-201ENSMUST00000129701 429 ntTSL 3 BASIC12.04□□□□□ -0.48
Sox9Q04887 Gm11981-201ENSMUST00000139769 664 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Gm17709-201ENSMUST00000174536 1096 ntBASIC12.04□□□□□ -0.48
Sox9Q04887 Gm5335-201ENSMUST00000182995 1000 ntBASIC12.04□□□□□ -0.48
Sox9Q04887 Gm7192-201ENSMUST00000210793 1137 ntBASIC12.04□□□□□ -0.48
Sox9Q04887 CT030166.5-201ENSMUST00000222249 420 ntBASIC12.04□□□□□ -0.48
Sox9Q04887 Try5-201ENSMUST00000064324 801 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 AC160405.1-201ENSMUST00000218207 1545 ntBASIC12.04□□□□□ -0.48
Sox9Q04887 Atp5s-204ENSMUST00000220916 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox9Q04887 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.03□□□□□ -0.48
Sox9Q04887 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Sox9Q04887 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
Sox9Q04887 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC12.03□□□□□ -0.48
Sox9Q04887 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.03□□□□□ -0.48
Sox9Q04887 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Gm12247-201ENSMUST00000117585 670 ntBASIC12.03□□□□□ -0.48
Sox9Q04887 Gm15625-201ENSMUST00000117617 1093 ntBASIC12.03□□□□□ -0.48
Sox9Q04887 Gm16305-201ENSMUST00000140747 556 ntBASIC12.03□□□□□ -0.48
Sox9Q04887 1700112K13Rik-201ENSMUST00000141892 701 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Gm24328-201ENSMUST00000175104 67 ntBASIC12.03□□□□□ -0.48
Sox9Q04887 1700085C21Rik-201ENSMUST00000187123 1082 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Gm37452-201ENSMUST00000194416 1160 ntBASIC12.03□□□□□ -0.48
Sox9Q04887 Gm29808-201ENSMUST00000194419 468 ntBASIC12.03□□□□□ -0.48
Sox9Q04887 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC12.03□□□□□ -0.48
Sox9Q04887 Gm45469-201ENSMUST00000210468 854 ntTSL 3 BASIC12.03□□□□□ -0.48
Sox9Q04887 E230014E18Rik-201ENSMUST00000215920 859 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Gm8768-201ENSMUST00000220020 826 ntBASIC12.03□□□□□ -0.48
Sox9Q04887 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
Sox9Q04887 Lsm3-201ENSMUST00000040607 743 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.03□□□□□ -0.48
Sox9Q04887 Izumo1r-202ENSMUST00000069408 1172 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sox9Q04887 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 68.9 ms