Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
Col8a1Q00780 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Gm6831-202ENSMUST00000213025 1673 ntBASIC9.97□□□□□ -0.81
Col8a1Q00780 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC9.97□□□□□ -0.81
Col8a1Q00780 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC9.97□□□□□ -0.81
Col8a1Q00780 Gm43858-201ENSMUST00000199418 1778 ntBASIC9.97□□□□□ -0.81
Col8a1Q00780 Gm23272-201ENSMUST00000104053 129 ntBASIC9.97□□□□□ -0.81
Col8a1Q00780 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC9.97□□□□□ -0.81
Col8a1Q00780 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Gm24248-201ENSMUST00000157321 322 ntBASIC9.97□□□□□ -0.81
Col8a1Q00780 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC9.97□□□□□ -0.81
Col8a1Q00780 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Gm37638-201ENSMUST00000194337 1123 ntBASIC9.97□□□□□ -0.81
Col8a1Q00780 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 AC124752.1-201ENSMUST00000222131 776 ntTSL 5 BASIC9.97□□□□□ -0.81
Col8a1Q00780 AC132260.2-201ENSMUST00000224482 344 ntBASIC9.97□□□□□ -0.81
Col8a1Q00780 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC9.97□□□□□ -0.81
Col8a1Q00780 AC093022.5-201ENSMUST00000226841 1079 ntBASIC9.97□□□□□ -0.81
Col8a1Q00780 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
Col8a1Q00780 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Col8a1Q00780 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Col8a1Q00780 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Col8a1Q00780 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC9.96□□□□□ -0.81
Col8a1Q00780 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC9.96□□□□□ -0.81
Col8a1Q00780 Gm28323-201ENSMUST00000186817 2499 ntBASIC9.96□□□□□ -0.81
Col8a1Q00780 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC9.96□□□□□ -0.81
Col8a1Q00780 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Col8a1Q00780 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Col8a1Q00780 Matn2-203ENSMUST00000226766 3252 ntBASIC9.96□□□□□ -0.81
Col8a1Q00780 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Col8a1Q00780 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
Col8a1Q00780 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC9.96□□□□□ -0.81
Col8a1Q00780 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.81
Col8a1Q00780 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm5419-201ENSMUST00000119301 527 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm5555-201ENSMUST00000120352 1111 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 Txnrd2-205ENSMUST00000126778 491 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm22379-201ENSMUST00000157480 131 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm22846-201ENSMUST00000157706 270 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm17070-201ENSMUST00000170463 784 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC9.96□□□□□ -0.82
Col8a1Q00780 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm37826-201ENSMUST00000195329 322 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm43854-201ENSMUST00000200418 394 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 AI839979-201ENSMUST00000200738 654 ntTSL 2 BASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm8574-201ENSMUST00000203207 924 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm43969-201ENSMUST00000204833 535 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC9.96□□□□□ -0.82
Col8a1Q00780 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC9.96□□□□□ -0.82
Col8a1Q00780 Acy1-211ENSMUST00000216400 1030 ntTSL 5 BASIC9.96□□□□□ -0.82
Col8a1Q00780 AC138604.1-201ENSMUST00000226969 739 ntBASIC9.96□□□□□ -0.82
Col8a1Q00780 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC9.96□□□□□ -0.82
Col8a1Q00780 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC9.96□□□□□ -0.82
Col8a1Q00780 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC9.96□□□□□ -0.82
Col8a1Q00780 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC9.96□□□□□ -0.82
Col8a1Q00780 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
Col8a1Q00780 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms