Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Chd6A3KFM7 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC9.36□□□□□ -0.91
Chd6A3KFM7 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Gm6210-201ENSMUST00000204734 1942 ntBASIC9.36□□□□□ -0.91
Chd6A3KFM7 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Chd6A3KFM7 Klf10-203ENSMUST00000227920 2144 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Ptprm-203ENSMUST00000224091 3773 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm22900-201ENSMUST00000104538 130 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm12028-201ENSMUST00000118065 436 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm18299-201ENSMUST00000192026 636 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 CT030035.1-201ENSMUST00000223964 935 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 AC123061.1-201ENSMUST00000228021 999 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm5148-201ENSMUST00000079755 1265 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm45266-201ENSMUST00000210111 2173 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Oprm1-208ENSMUST00000092734 1569 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm11685-201ENSMUST00000141559 1332 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Stard3nl-205ENSMUST00000197565 1391 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Scp2-202ENSMUST00000106701 772 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC9.35□□□□□ -0.91
Chd6A3KFM7 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Ccdc28a-205ENSMUST00000174592 882 ntTSL 5 BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm5873-201ENSMUST00000177157 1066 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm29431-201ENSMUST00000189848 449 ntTSL 5 BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm18711-201ENSMUST00000199341 750 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm18783-201ENSMUST00000220465 1151 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Gm5939-201ENSMUST00000119613 2874 ntBASIC9.35□□□□□ -0.91
Chd6A3KFM7 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Chd6A3KFM7 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Mir683-2-201ENSMUST00000102099 109 ntBASIC9.34□□□□□ -0.91
Chd6A3KFM7 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Gm7781-201ENSMUST00000117258 788 ntBASIC9.34□□□□□ -0.91
Chd6A3KFM7 Gm13777-201ENSMUST00000118208 345 ntBASIC9.34□□□□□ -0.91
Chd6A3KFM7 Gm45591-201ENSMUST00000129058 843 ntTSL 3 BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Mir683-1-201ENSMUST00000179371 109 ntBASIC9.34□□□□□ -0.91
Chd6A3KFM7 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Gm38349-201ENSMUST00000195732 462 ntBASIC9.34□□□□□ -0.91
Chd6A3KFM7 Gm43460-201ENSMUST00000202491 1057 ntBASIC9.34□□□□□ -0.91
Chd6A3KFM7 Gm21054-201ENSMUST00000203981 380 ntBASIC9.34□□□□□ -0.91
Chd6A3KFM7 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Gm35412-201ENSMUST00000220437 999 ntBASIC9.34□□□□□ -0.91
Chd6A3KFM7 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Ccdc78-201ENSMUST00000095500 1651 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Gm31182-201ENSMUST00000219061 2391 ntTSL 5 BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Trh-201ENSMUST00000006046 1384 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC9.34□□□□□ -0.91
Chd6A3KFM7 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms