Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Gm14832-201ENSMUST00000121289 322 ntBASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 4833421G17Rik-201ENSMUST00000191704 844 ntBASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Gm35960-201ENSMUST00000202712 767 ntBASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Cts7-204ENSMUST00000225321 1257 ntBASIC11.01□□□□□ -0.65
Trim39Q9ESN2 AC113031.8-201ENSMUST00000227856 631 ntBASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Pcdhgb4-202ENSMUST00000195363 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Crebrf-203ENSMUST00000142539 2674 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
Trim39Q9ESN2 Parvg-207ENSMUST00000163667 2700 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Arvcf-203ENSMUST00000115612 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Vwa5b2-207ENSMUST00000159780 4042 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Gm24830-201ENSMUST00000102024 166 ntBASIC11□□□□□ -0.65
Trim39Q9ESN2 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 AV099323-201ENSMUST00000124336 921 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Fam240b-201ENSMUST00000180282 1097 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Mir8109-201ENSMUST00000184375 117 ntBASIC11□□□□□ -0.65
Trim39Q9ESN2 Gm38266-201ENSMUST00000194931 421 ntBASIC11□□□□□ -0.65
Trim39Q9ESN2 Ighv1-60-201ENSMUST00000195816 405 ntBASIC11□□□□□ -0.65
Trim39Q9ESN2 Gm5708-201ENSMUST00000196289 886 ntBASIC11□□□□□ -0.65
Trim39Q9ESN2 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC11□□□□□ -0.65
Trim39Q9ESN2 CT025561.1-201ENSMUST00000214972 674 ntBASIC11□□□□□ -0.65
Trim39Q9ESN2 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Gm26232-201ENSMUST00000083360 166 ntBASIC11□□□□□ -0.65
Trim39Q9ESN2 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11□□□□□ -0.65
Trim39Q9ESN2 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Trim39Q9ESN2 Grip1-216ENSMUST00000154238 2482 ntTSL 5 BASIC11□□□□□ -0.65
Trim39Q9ESN2 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC11□□□□□ -0.65
Trim39Q9ESN2 AC107453.4-201ENSMUST00000227068 1817 ntBASIC11□□□□□ -0.65
Trim39Q9ESN2 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Trim39Q9ESN2 Tom1l2-206ENSMUST00000102683 4999 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim39Q9ESN2 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim39Q9ESN2 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
Trim39Q9ESN2 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC10.99□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms