Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Mypopos-202ENSMUST00000205975 2321 ntBASIC12.9□□□□□ -0.34
Col6a1Q04857 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.9□□□□□ -0.34
Col6a1Q04857 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Col6a1Q04857 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Col6a1Q04857 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Gm14892-201ENSMUST00000117636 267 ntBASIC12.9□□□□□ -0.34
Col6a1Q04857 Gm13117-201ENSMUST00000120894 691 ntBASIC12.9□□□□□ -0.34
Col6a1Q04857 Gm24248-201ENSMUST00000157321 322 ntBASIC12.9□□□□□ -0.34
Col6a1Q04857 Gm44953-201ENSMUST00000208745 1286 ntBASIC12.9□□□□□ -0.34
Col6a1Q04857 AC112945.1-201ENSMUST00000226413 514 ntBASIC12.9□□□□□ -0.34
Col6a1Q04857 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Col6a1Q04857 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Col6a1Q04857 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Col6a1Q04857 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Col6a1Q04857 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.9□□□□□ -0.34
Col6a1Q04857 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Gm44806-201ENSMUST00000205574 2303 ntBASIC12.9□□□□□ -0.34
Col6a1Q04857 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.9□□□□□ -0.34
Col6a1Q04857 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC12.9□□□□□ -0.34
Col6a1Q04857 Gm5641-201ENSMUST00000091130 1488 ntBASIC12.9□□□□□ -0.34
Col6a1Q04857 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Col6a1Q04857 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Col6a1Q04857 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC12.9□□□□□ -0.35
Col6a1Q04857 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
Col6a1Q04857 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.89□□□□□ -0.35
Col6a1Q04857 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
Col6a1Q04857 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
Col6a1Q04857 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC12.89□□□□□ -0.35
Col6a1Q04857 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Gm18499-201ENSMUST00000220808 1021 ntBASIC12.89□□□□□ -0.35
Col6a1Q04857 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Olfr584-201ENSMUST00000098210 964 ntBASIC12.89□□□□□ -0.35
Col6a1Q04857 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.89□□□□□ -0.35
Col6a1Q04857 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Col6a1Q04857 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Col6a1Q04857 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Col6a1Q04857 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Col6a1Q04857 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Col6a1Q04857 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.88□□□□□ -0.35
Col6a1Q04857 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col6a1Q04857 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC12.88□□□□□ -0.35
Col6a1Q04857 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms