Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Nkx3-2P97503 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Gm9129-201ENSMUST00000218173 1689 ntBASIC11.05□□□□□ -0.64
Nkx3-2P97503 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC11.05□□□□□ -0.64
Nkx3-2P97503 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Gm27530-201ENSMUST00000184096 98 ntBASIC11.05□□□□□ -0.64
Nkx3-2P97503 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Mir7686-201ENSMUST00000200604 57 ntBASIC11.05□□□□□ -0.64
Nkx3-2P97503 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Gm45770-201ENSMUST00000212105 616 ntBASIC11.05□□□□□ -0.64
Nkx3-2P97503 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Gm43807-201ENSMUST00000200678 1781 ntBASIC11.05□□□□□ -0.64
Nkx3-2P97503 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Nkx3-2P97503 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 BC043934-202ENSMUST00000185694 2356 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm15207-201ENSMUST00000119259 442 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm15595-201ENSMUST00000120840 961 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm7666-201ENSMUST00000146631 819 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm4310-201ENSMUST00000177847 889 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm9034-201ENSMUST00000182071 1005 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm9540-201ENSMUST00000188230 478 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm37246-201ENSMUST00000192665 835 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm38228-201ENSMUST00000193169 1293 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm17931-201ENSMUST00000208132 634 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 Gm45575-201ENSMUST00000210283 548 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Nkx3-2P97503 AC113082.1-201ENSMUST00000217324 327 ntBASIC11.04□□□□□ -0.64
Nkx3-2P97503 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Nkx3-2P97503 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms