Protein–RNA interactions for Protein: Q03358

Msx2, Homeobox protein MSX-2, mousemouse

Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx2Q03358 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Msx2Q03358 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Msx2Q03358 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Msx2Q03358 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC11.31□□□□□ -0.6
Msx2Q03358 Angptl2-201ENSMUST00000004208 3339 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Gm38273-201ENSMUST00000194987 2382 ntBASIC11.31□□□□□ -0.6
Msx2Q03358 AC153380.1-201ENSMUST00000214959 2364 ntBASIC11.31□□□□□ -0.6
Msx2Q03358 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Msx2Q03358 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Gm5419-201ENSMUST00000119301 527 ntBASIC11.31□□□□□ -0.6
Msx2Q03358 Gm11658-201ENSMUST00000120913 1008 ntBASIC11.31□□□□□ -0.6
Msx2Q03358 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC11.31□□□□□ -0.6
Msx2Q03358 Gm24548-201ENSMUST00000158650 108 ntBASIC11.31□□□□□ -0.6
Msx2Q03358 Gm2467-201ENSMUST00000182266 1010 ntBASIC11.31□□□□□ -0.6
Msx2Q03358 Gm6981-201ENSMUST00000182467 1008 ntBASIC11.31□□□□□ -0.6
Msx2Q03358 Gm18893-201ENSMUST00000198416 943 ntBASIC11.31□□□□□ -0.6
Msx2Q03358 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC11.31□□□□□ -0.6
Msx2Q03358 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Msx2Q03358 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC11.31□□□□□ -0.6
Msx2Q03358 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC11.31□□□□□ -0.6
Msx2Q03358 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Msx2Q03358 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Msx2Q03358 Caprin1-202ENSMUST00000111147 4069 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC11.3□□□□□ -0.6
Msx2Q03358 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Msx2Q03358 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Msx2Q03358 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Msx2Q03358 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Mms19-201ENSMUST00000026168 3162 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Msx2Q03358 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Msx2Q03358 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC11.3□□□□□ -0.6
Msx2Q03358 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Gm2639-201ENSMUST00000156881 1297 ntBASIC11.3□□□□□ -0.6
Msx2Q03358 Gm24845-201ENSMUST00000158034 109 ntBASIC11.3□□□□□ -0.6
Msx2Q03358 H2-Pa-201ENSMUST00000182803 626 ntBASIC11.3□□□□□ -0.6
Msx2Q03358 Gm8369-204ENSMUST00000188633 1227 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
Msx2Q03358 Gm38314-201ENSMUST00000195709 625 ntBASIC11.3□□□□□ -0.6
Msx2Q03358 Olfr793-ps1-201ENSMUST00000205161 895 ntBASIC11.3□□□□□ -0.6
Msx2Q03358 Gm7619-201ENSMUST00000210649 1282 ntBASIC11.3□□□□□ -0.6
Msx2Q03358 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC11.3□□□□□ -0.6
Msx2Q03358 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Thoc7-209ENSMUST00000225325 765 ntBASIC11.3□□□□□ -0.6
Msx2Q03358 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Msx2Q03358 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 AC154404.1-201ENSMUST00000223601 2077 ntBASIC11.3□□□□□ -0.6
Msx2Q03358 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC11.3□□□□□ -0.6
Msx2Q03358 Ints10-201ENSMUST00000034328 4201 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC11.3□□□□□ -0.6
Msx2Q03358 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC11.3□□□□□ -0.6
Msx2Q03358 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC11.3□□□□□ -0.6
Msx2Q03358 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Gm37031-201ENSMUST00000195487 2530 ntBASIC11.3□□□□□ -0.6
Msx2Q03358 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Msx2Q03358 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Msx2Q03358 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Msx2Q03358 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC11.29□□□□□ -0.6
Msx2Q03358 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Msx2Q03358 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Msx2Q03358 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Msx2Q03358 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC11.29□□□□□ -0.6
Msx2Q03358 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Msx2Q03358 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC11.29□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms