Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col3a1P08121 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col3a1P08121 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col3a1P08121 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col3a1P08121 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col3a1P08121 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col3a1P08121 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC13.8□□□□□ -0.2
Col3a1P08121 Gm14398-201ENSMUST00000117287 1073 ntBASIC13.8□□□□□ -0.2
Col3a1P08121 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC13.8□□□□□ -0.2
Col3a1P08121 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC13.8□□□□□ -0.2
Col3a1P08121 Gm9135-201ENSMUST00000182963 990 ntBASIC13.8□□□□□ -0.2
Col3a1P08121 Mrip-ps-201ENSMUST00000184613 940 ntBASIC13.8□□□□□ -0.2
Col3a1P08121 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Gm43912-201ENSMUST00000204352 538 ntBASIC13.8□□□□□ -0.2
Col3a1P08121 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC13.8□□□□□ -0.2
Col3a1P08121 AC126799.1-201ENSMUST00000221976 246 ntBASIC13.8□□□□□ -0.2
Col3a1P08121 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Col3a1P08121 CT030653.1-201ENSMUST00000224382 1279 ntBASIC13.8□□□□□ -0.2
Col3a1P08121 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Col3a1P08121 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Col3a1P08121 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
Col3a1P08121 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Col3a1P08121 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC13.8□□□□□ -0.2
Col3a1P08121 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC13.8□□□□□ -0.2
Col3a1P08121 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Col3a1P08121 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC13.8□□□□□ -0.2
Col3a1P08121 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Col3a1P08121 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC13.8□□□□□ -0.2
Col3a1P08121 Anxa8-202ENSMUST00000120077 1208 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Gm11980-201ENSMUST00000121445 986 ntBASIC13.8□□□□□ -0.2
Col3a1P08121 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Gm42867-201ENSMUST00000202995 469 ntBASIC13.8□□□□□ -0.2
Col3a1P08121 AC140375.1-201ENSMUST00000225421 694 ntBASIC13.8□□□□□ -0.2
Col3a1P08121 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col3a1P08121 Gm9915-201ENSMUST00000066196 1383 ntBASIC13.79□□□□□ -0.2
Col3a1P08121 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
Col3a1P08121 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col3a1P08121 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC13.79□□□□□ -0.2
Col3a1P08121 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col3a1P08121 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Col3a1P08121 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC13.79□□□□□ -0.2
Col3a1P08121 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col3a1P08121 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col3a1P08121 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Col3a1P08121 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC13.79□□□□□ -0.2
Col3a1P08121 Gm8723-201ENSMUST00000166076 820 ntBASIC13.79□□□□□ -0.2
Col3a1P08121 Gm8701-201ENSMUST00000169259 874 ntBASIC13.79□□□□□ -0.2
Col3a1P08121 Gm28833-201ENSMUST00000189671 559 ntBASIC13.79□□□□□ -0.2
Col3a1P08121 Gm37638-201ENSMUST00000194337 1123 ntBASIC13.79□□□□□ -0.2
Col3a1P08121 Gm7902-201ENSMUST00000198842 947 ntBASIC13.79□□□□□ -0.2
Col3a1P08121 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC13.79□□□□□ -0.2
Col3a1P08121 Gm7525-201ENSMUST00000219425 454 ntBASIC13.79□□□□□ -0.2
Col3a1P08121 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC13.79□□□□□ -0.2
Col3a1P08121 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC13.79□□□□□ -0.2
Col3a1P08121 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC13.79□□□□□ -0.2
Col3a1P08121 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col3a1P08121 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Col3a1P08121 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col3a1P08121 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Gm5308-201ENSMUST00000196752 1354 ntBASIC13.79□□□□□ -0.2
Col3a1P08121 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Col3a1P08121 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col3a1P08121 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 77.5 ms