Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm26540-201ENSMUST00000181858 1310 ntTSL 5 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Gm4895-201ENSMUST00000181646 1137 ntBASIC12.37□□□□□ -0.43
Clp1Q99LI9 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Ighv1-60-201ENSMUST00000195816 405 ntBASIC12.37□□□□□ -0.43
Clp1Q99LI9 Gm43671-201ENSMUST00000200422 433 ntBASIC12.37□□□□□ -0.43
Clp1Q99LI9 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Gm18706-201ENSMUST00000210053 1066 ntBASIC12.37□□□□□ -0.43
Clp1Q99LI9 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 AC154757.2-201ENSMUST00000228885 743 ntBASIC12.37□□□□□ -0.43
Clp1Q99LI9 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Gm11470-201ENSMUST00000118868 1475 ntBASIC12.37□□□□□ -0.43
Clp1Q99LI9 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Kcnk16-202ENSMUST00000225596 2127 ntBASIC12.37□□□□□ -0.43
Clp1Q99LI9 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Clp1Q99LI9 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Lgi1-204ENSMUST00000196090 1789 ntTSL 5 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Gm5641-201ENSMUST00000091130 1488 ntBASIC12.36□□□□□ -0.43
Clp1Q99LI9 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Mir671-201ENSMUST00000102432 98 ntBASIC12.36□□□□□ -0.43
Clp1Q99LI9 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Gm11502-201ENSMUST00000120917 1211 ntBASIC12.36□□□□□ -0.43
Clp1Q99LI9 Gm13445-201ENSMUST00000121664 307 ntBASIC12.36□□□□□ -0.43
Clp1Q99LI9 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Smim20-201ENSMUST00000147148 922 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC12.36□□□□□ -0.43
Clp1Q99LI9 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 AC164618.2-201ENSMUST00000224770 573 ntBASIC12.36□□□□□ -0.43
Clp1Q99LI9 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.36□□□□□ -0.43
Clp1Q99LI9 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC12.36□□□□□ -0.43
Clp1Q99LI9 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC12.36□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms