Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm43242-201ENSMUST00000199507 1776 ntBASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm24891-201ENSMUST00000104391 136 ntBASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm8815-201ENSMUST00000173809 620 ntBASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm5733-201ENSMUST00000190232 939 ntBASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm18636-201ENSMUST00000218846 1066 ntBASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Rassf8-202ENSMUST00000058538 1131 ntBASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Upf3bQ3ULL6 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Gm13035-201ENSMUST00000117496 342 ntBASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Mir219a-1-201ENSMUST00000083621 110 ntBASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Upf3bQ3ULL6 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Upf3bQ3ULL6 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms