Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC12.4□□□□□ -0.42
Shmt1P50431 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Shmt1P50431 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Shmt1P50431 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC12.4□□□□□ -0.42
Shmt1P50431 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC12.4□□□□□ -0.42
Shmt1P50431 Mup-ps26-201ENSMUST00000121751 202 ntBASIC12.4□□□□□ -0.42
Shmt1P50431 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC12.4□□□□□ -0.42
Shmt1P50431 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC12.4□□□□□ -0.42
Shmt1P50431 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Shmt1P50431 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
Shmt1P50431 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC12.4□□□□□ -0.42
Shmt1P50431 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
Shmt1P50431 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
Shmt1P50431 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Shmt1P50431 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Gm45199-201ENSMUST00000207640 1507 ntBASIC12.4□□□□□ -0.42
Shmt1P50431 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Shmt1P50431 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Shmt1P50431 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Shmt1P50431 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.4□□□□□ -0.43
Shmt1P50431 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
Shmt1P50431 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Shmt1P50431 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Shmt1P50431 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Shmt1P50431 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Gm43174-201ENSMUST00000195914 2445 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Shmt1P50431 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Shmt1P50431 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 n-R5s64-201ENSMUST00000102019 119 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Gm14193-201ENSMUST00000105067 153 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Gm22711-201ENSMUST00000116890 133 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Gm11700-201ENSMUST00000119409 403 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Gm13328-201ENSMUST00000120816 1020 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC12.39□□□□□ -0.43
Shmt1P50431 Gm7666-201ENSMUST00000146631 819 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Gm24844-201ENSMUST00000158679 127 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC12.39□□□□□ -0.43
Shmt1P50431 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Shmt1P50431 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Shmt1P50431 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC12.39□□□□□ -0.43
Shmt1P50431 D9Wsu149-201ENSMUST00000214169 594 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Gm4797-201ENSMUST00000219075 1283 ntBASIC12.39□□□□□ -0.43
Shmt1P50431 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
Shmt1P50431 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Shmt1P50431 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Shmt1P50431 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC12.39□□□□□ -0.43
Shmt1P50431 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Shmt1P50431 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Gm9387-201ENSMUST00000098624 1320 ntBASIC12.38□□□□□ -0.43
Shmt1P50431 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Gm3836-201ENSMUST00000211377 1613 ntBASIC12.38□□□□□ -0.43
Shmt1P50431 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Gm22920-201ENSMUST00000102175 109 ntBASIC12.38□□□□□ -0.43
Shmt1P50431 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Shmt1P50431 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 75 ms