Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm15374-201ENSMUST00000119313 844 ntBASIC11.5□□□□□ -0.57
Chd3B1AR17 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm3551-201ENSMUST00000190750 664 ntBASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm45113-201ENSMUST00000207518 165 ntBASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm3028-201ENSMUST00000213805 1119 ntBASIC11.5□□□□□ -0.57
Chd3B1AR17 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm5879-201ENSMUST00000089501 1209 ntBASIC11.5□□□□□ -0.57
Chd3B1AR17 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC11.5□□□□□ -0.57
Chd3B1AR17 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Chd3B1AR17 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Gm43773-201ENSMUST00000198548 2162 ntBASIC11.49□□□□□ -0.57
Chd3B1AR17 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Il17rd-201ENSMUST00000035336 8280 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Chd3B1AR17 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC11.49□□□□□ -0.57
Chd3B1AR17 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Gm27390-201ENSMUST00000184516 176 ntBASIC11.49□□□□□ -0.57
Chd3B1AR17 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC11.49□□□□□ -0.57
Chd3B1AR17 Gm7395-201ENSMUST00000216059 1045 ntBASIC11.49□□□□□ -0.57
Chd3B1AR17 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Chd3B1AR17 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Chd3B1AR17 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC11.49□□□□□ -0.57
Chd3B1AR17 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Gm42480-201ENSMUST00000198434 2595 ntBASIC11.49□□□□□ -0.57
Chd3B1AR17 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Chd3B1AR17 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Gm18986-201ENSMUST00000216029 1986 ntBASIC11.49□□□□□ -0.57
Chd3B1AR17 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC11.49□□□□□ -0.57
Chd3B1AR17 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Chd3B1AR17 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC11.49□□□□□ -0.57
Chd3B1AR17 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC11.48□□□□□ -0.57
Chd3B1AR17 Gm9358-201ENSMUST00000183067 927 ntBASIC11.48□□□□□ -0.57
Chd3B1AR17 Mir6958-201ENSMUST00000184207 73 ntBASIC11.48□□□□□ -0.57
Chd3B1AR17 Gm38210-201ENSMUST00000191944 809 ntBASIC11.48□□□□□ -0.57
Chd3B1AR17 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Gm7600-201ENSMUST00000209657 785 ntBASIC11.48□□□□□ -0.57
Chd3B1AR17 AC164437.3-201ENSMUST00000228323 347 ntBASIC11.48□□□□□ -0.57
Chd3B1AR17 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC11.48□□□□□ -0.57
Chd3B1AR17 Gm5451-201ENSMUST00000080545 579 ntBASIC11.48□□□□□ -0.57
Chd3B1AR17 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 AC164702.1-201ENSMUST00000220135 2212 ntBASIC11.48□□□□□ -0.57
Chd3B1AR17 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Zfp125-201ENSMUST00000079237 2488 ntBASIC11.48□□□□□ -0.57
Chd3B1AR17 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
Chd3B1AR17 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Chd3B1AR17 Gm1995-201ENSMUST00000220838 2602 ntBASIC11.48□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 271.2 ms