Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HMGA1P17096 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.26■□□□□ 0.03
HMGA1P17096 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.26■□□□□ 0.03
HMGA1P17096 HINT2P1-201ENST00000419438 481 ntBASIC15.26■□□□□ 0.03
HMGA1P17096 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.26■□□□□ 0.03
HMGA1P17096 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.26■□□□□ 0.03
HMGA1P17096 PFN2-206ENST00000461930 606 ntTSL 4 BASIC15.26■□□□□ 0.03
HMGA1P17096 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC15.26■□□□□ 0.03
HMGA1P17096 RN7SL258P-201ENST00000478664 300 ntBASIC15.26■□□□□ 0.03
HMGA1P17096 PGAM1P5-201ENST00000548011 764 ntBASIC15.26■□□□□ 0.03
HMGA1P17096 STUB1-204ENST00000564370 875 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGA1P17096 AC026803.1-201ENST00000569130 274 ntBASIC15.26■□□□□ 0.03
HMGA1P17096 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.26■□□□□ 0.03
HMGA1P17096 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC15.26■□□□□ 0.03
HMGA1P17096 MIR3188-201ENST00000583494 85 ntBASIC15.26■□□□□ 0.03
HMGA1P17096 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC15.26■□□□□ 0.03
HMGA1P17096 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HMGA1P17096 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC15.26■□□□□ 0.03
HMGA1P17096 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HMGA1P17096 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HMGA1P17096 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HMGA1P17096 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGA1P17096 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.26■□□□□ 0.03
HMGA1P17096 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGA1P17096 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
HMGA1P17096 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
HMGA1P17096 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGA1P17096 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC15.26■□□□□ 0.03
HMGA1P17096 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HMGA1P17096 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.25■□□□□ 0.03
HMGA1P17096 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 FRMPD2B-201ENST00000431305 1347 ntBASIC15.25■□□□□ 0.03
HMGA1P17096 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HMGA1P17096 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
HMGA1P17096 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 OR2K2-202ENST00000374428 1038 ntBASIC15.25■□□□□ 0.03
HMGA1P17096 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.25■□□□□ 0.03
HMGA1P17096 TSPY25P-201ENST00000429463 745 ntBASIC15.25■□□□□ 0.03
HMGA1P17096 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC15.25■□□□□ 0.03
HMGA1P17096 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.25■□□□□ 0.03
HMGA1P17096 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.25■□□□□ 0.03
HMGA1P17096 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC15.25■□□□□ 0.03
HMGA1P17096 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
HMGA1P17096 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC15.25■□□□□ 0.03
HMGA1P17096 AL109837.1-201ENST00000603272 613 ntBASIC15.25■□□□□ 0.03
HMGA1P17096 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 AC015909.3-201ENST00000572855 1794 ntBASIC15.25■□□□□ 0.03
HMGA1P17096 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.25■□□□□ 0.03
HMGA1P17096 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
HMGA1P17096 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
HMGA1P17096 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGA1P17096 TBC1D3J-201ENST00000620719 1426 ntBASIC15.25■□□□□ 0.03
HMGA1P17096 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HMGA1P17096 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGA1P17096 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
HMGA1P17096 AL354702.1-201ENST00000442006 1960 ntBASIC15.24■□□□□ 0.03
HMGA1P17096 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HMGA1P17096 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms