Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 AC079776.1-201ENST00000401540 1152 ntBASIC13.53□□□□□ -0.24
USB1Q9BQ65 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 AC112492.5-201ENST00000421897 457 ntBASIC13.53□□□□□ -0.24
USB1Q9BQ65 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 AC004066.1-201ENST00000502488 802 ntBASIC13.53□□□□□ -0.24
USB1Q9BQ65 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 RN7SL819P-201ENST00000581896 270 ntBASIC13.53□□□□□ -0.24
USB1Q9BQ65 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 AL512343.1-201ENST00000605837 169 ntBASIC13.53□□□□□ -0.24
USB1Q9BQ65 AC133552.6-201ENST00000613406 534 ntBASIC13.53□□□□□ -0.24
USB1Q9BQ65 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 AC134312.5-201ENST00000568031 1313 ntBASIC13.53□□□□□ -0.24
USB1Q9BQ65 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 AC018665.1-201ENST00000622927 1362 ntBASIC13.53□□□□□ -0.24
USB1Q9BQ65 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 AL161772.1-201ENST00000610494 4412 ntBASIC13.53□□□□□ -0.24
USB1Q9BQ65 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.52□□□□□ -0.24
USB1Q9BQ65 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 LINC00528-201ENST00000600723 2160 ntBASIC13.52□□□□□ -0.24
USB1Q9BQ65 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.52□□□□□ -0.24
USB1Q9BQ65 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
USB1Q9BQ65 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.24
USB1Q9BQ65 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.52□□□□□ -0.24
USB1Q9BQ65 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
USB1Q9BQ65 AC117489.1-201ENST00000625169 3217 ntBASIC13.52□□□□□ -0.24
USB1Q9BQ65 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 CRYGB-201ENST00000260988 641 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 AL133325.2-201ENST00000431034 449 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 C2orf27AP3-201ENST00000434123 579 ntBASIC13.52□□□□□ -0.25
USB1Q9BQ65 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 AC093433.1-201ENST00000458048 571 ntBASIC13.52□□□□□ -0.25
USB1Q9BQ65 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 AC104989.1-201ENST00000519711 778 ntBASIC13.52□□□□□ -0.25
USB1Q9BQ65 ATOX1-206ENST00000522710 591 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 CLUHP6-201ENST00000580789 941 ntBASIC13.52□□□□□ -0.25
USB1Q9BQ65 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 ATF5-205ENST00000600336 682 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 AL354718.3-201ENST00000616414 581 ntBASIC13.52□□□□□ -0.25
USB1Q9BQ65 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 CR382287.1-201ENST00000623954 586 ntBASIC13.52□□□□□ -0.25
USB1Q9BQ65 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
USB1Q9BQ65 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 AC007292.2-201ENST00000593524 1812 ntBASIC13.52□□□□□ -0.25
USB1Q9BQ65 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
USB1Q9BQ65 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms