Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
Scn11aQ9R053 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
Scn11aQ9R053 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Scn11aQ9R053 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
Scn11aQ9R053 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Scn11aQ9R053 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC24.88■■□□□ 1.57
Scn11aQ9R053 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC24.88■■□□□ 1.57
Scn11aQ9R053 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Scn11aQ9R053 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Scn11aQ9R053 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Scn11aQ9R053 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Scn11aQ9R053 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC24.88■■□□□ 1.57
Scn11aQ9R053 Gm43403-201ENSMUST00000198011 1786 ntBASIC24.87■■□□□ 1.57
Scn11aQ9R053 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Scn11aQ9R053 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
Scn11aQ9R053 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Scn11aQ9R053 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Scn11aQ9R053 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Scn11aQ9R053 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Scn11aQ9R053 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Scn11aQ9R053 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Scn11aQ9R053 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Scn11aQ9R053 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Scn11aQ9R053 Gm43173-201ENSMUST00000202246 593 ntBASIC24.86■■□□□ 1.57
Scn11aQ9R053 Gm6139-201ENSMUST00000079261 882 ntBASIC24.86■■□□□ 1.57
Scn11aQ9R053 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
Scn11aQ9R053 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC24.85■■□□□ 1.57
Scn11aQ9R053 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC24.85■■□□□ 1.57
Scn11aQ9R053 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
Scn11aQ9R053 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Scn11aQ9R053 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Scn11aQ9R053 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Scn11aQ9R053 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Scn11aQ9R053 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Scn11aQ9R053 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Scn11aQ9R053 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Scn11aQ9R053 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Scn11aQ9R053 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC24.84■■□□□ 1.57
Scn11aQ9R053 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Scn11aQ9R053 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC24.83■■□□□ 1.57
Scn11aQ9R053 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.56
Scn11aQ9R053 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Scn11aQ9R053 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Scn11aQ9R053 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Scn11aQ9R053 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Scn11aQ9R053 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Scn11aQ9R053 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Scn11aQ9R053 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Scn11aQ9R053 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
Scn11aQ9R053 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC24.82■■□□□ 1.56
Scn11aQ9R053 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Scn11aQ9R053 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Scn11aQ9R053 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Scn11aQ9R053 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Scn11aQ9R053 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
Scn11aQ9R053 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Scn11aQ9R053 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Scn11aQ9R053 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
Scn11aQ9R053 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC24.8■■□□□ 1.56
Scn11aQ9R053 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Scn11aQ9R053 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Scn11aQ9R053 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC24.79■■□□□ 1.56
Scn11aQ9R053 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC24.79■■□□□ 1.56
Scn11aQ9R053 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
Scn11aQ9R053 Gm26571-201ENSMUST00000181399 666 ntBASIC24.79■■□□□ 1.56
Scn11aQ9R053 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Scn11aQ9R053 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Scn11aQ9R053 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC24.78■■□□□ 1.56
Scn11aQ9R053 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
Scn11aQ9R053 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Scn11aQ9R053 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
Scn11aQ9R053 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
Scn11aQ9R053 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
Scn11aQ9R053 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC24.77■■□□□ 1.56
Scn11aQ9R053 Gm7291-201ENSMUST00000199147 382 ntBASIC24.77■■□□□ 1.56
Scn11aQ9R053 Spcs1-204ENSMUST00000226782 949 ntBASIC24.77■■□□□ 1.56
Scn11aQ9R053 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Scn11aQ9R053 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Scn11aQ9R053 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
Scn11aQ9R053 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Scn11aQ9R053 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
Scn11aQ9R053 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC24.75■■□□□ 1.55
Scn11aQ9R053 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
Scn11aQ9R053 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Scn11aQ9R053 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Scn11aQ9R053 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Scn11aQ9R053 Gm5576-201ENSMUST00000075809 1236 ntBASIC24.75■■□□□ 1.55
Scn11aQ9R053 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
Scn11aQ9R053 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Scn11aQ9R053 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC24.74■■□□□ 1.55
Scn11aQ9R053 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
Scn11aQ9R053 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC24.74■■□□□ 1.55
Scn11aQ9R053 Gm5913-201ENSMUST00000119397 1399 ntBASIC24.74■■□□□ 1.55
Scn11aQ9R053 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
Scn11aQ9R053 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Scn11aQ9R053 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
Scn11aQ9R053 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
Scn11aQ9R053 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Scn11aQ9R053 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Scn11aQ9R053 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms