Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gm12922-201ENSMUST00000120626 809 ntBASIC23.83■■□□□ 1.41
Vps53Q8CCB4 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
Vps53Q8CCB4 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Vps53Q8CCB4 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Vps53Q8CCB4 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
Vps53Q8CCB4 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
Vps53Q8CCB4 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Vps53Q8CCB4 Gm11847-201ENSMUST00000125165 1119 ntBASIC23.82■■□□□ 1.4
Vps53Q8CCB4 Gm10399-202ENSMUST00000202768 748 ntBASIC23.82■■□□□ 1.4
Vps53Q8CCB4 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC23.82■■□□□ 1.4
Vps53Q8CCB4 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC23.82■■□□□ 1.4
Vps53Q8CCB4 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Vps53Q8CCB4 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Vps53Q8CCB4 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC23.81■■□□□ 1.4
Vps53Q8CCB4 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Vps53Q8CCB4 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Vps53Q8CCB4 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Vps53Q8CCB4 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Gm12504-201ENSMUST00000120860 2231 ntBASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Gm43403-201ENSMUST00000198011 1786 ntBASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Vps53Q8CCB4 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Vps53Q8CCB4 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Vps53Q8CCB4 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Vps53Q8CCB4 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
Vps53Q8CCB4 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Vps53Q8CCB4 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Vps53Q8CCB4 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Vps53Q8CCB4 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Vps53Q8CCB4 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Vps53Q8CCB4 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Vps53Q8CCB4 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Vps53Q8CCB4 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Vps53Q8CCB4 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Vps53Q8CCB4 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC23.78■■□□□ 1.4
Vps53Q8CCB4 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC23.78■■□□□ 1.4
Vps53Q8CCB4 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC23.78■■□□□ 1.4
Vps53Q8CCB4 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Vps53Q8CCB4 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Vps53Q8CCB4 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC23.77■■□□□ 1.4
Vps53Q8CCB4 Serp2-204ENSMUST00000228055 705 ntBASIC23.77■■□□□ 1.4
Vps53Q8CCB4 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Vps53Q8CCB4 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Vps53Q8CCB4 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
Vps53Q8CCB4 Gm6277-202ENSMUST00000224036 2779 ntBASIC23.77■■□□□ 1.4
Vps53Q8CCB4 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Vps53Q8CCB4 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Vps53Q8CCB4 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Vps53Q8CCB4 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Vps53Q8CCB4 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Vps53Q8CCB4 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Vps53Q8CCB4 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Vps53Q8CCB4 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
Vps53Q8CCB4 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
Vps53Q8CCB4 AC164883.3-201ENSMUST00000227396 1774 ntBASIC23.75■■□□□ 1.39
Vps53Q8CCB4 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Vps53Q8CCB4 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Vps53Q8CCB4 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Vps53Q8CCB4 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Vps53Q8CCB4 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
Vps53Q8CCB4 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Vps53Q8CCB4 Appbp2os-202ENSMUST00000206972 447 ntBASIC23.74■■□□□ 1.39
Vps53Q8CCB4 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Vps53Q8CCB4 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
Vps53Q8CCB4 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Vps53Q8CCB4 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Vps53Q8CCB4 AC116713.1-201ENSMUST00000215074 430 ntBASIC23.73■■□□□ 1.39
Vps53Q8CCB4 AC140930.3-201ENSMUST00000222935 274 ntBASIC23.73■■□□□ 1.39
Vps53Q8CCB4 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC23.73■■□□□ 1.39
Vps53Q8CCB4 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Vps53Q8CCB4 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Vps53Q8CCB4 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Vps53Q8CCB4 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC23.72■■□□□ 1.39
Vps53Q8CCB4 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
Vps53Q8CCB4 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Vps53Q8CCB4 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Vps53Q8CCB4 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Vps53Q8CCB4 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
Vps53Q8CCB4 AC158990.1-201ENSMUST00000221450 2016 ntBASIC23.71■■□□□ 1.39
Vps53Q8CCB4 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
Vps53Q8CCB4 Gm12821-201ENSMUST00000120022 600 ntBASIC23.71■■□□□ 1.39
Vps53Q8CCB4 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Vps53Q8CCB4 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Vps53Q8CCB4 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Vps53Q8CCB4 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Vps53Q8CCB4 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
Vps53Q8CCB4 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Vps53Q8CCB4 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Vps53Q8CCB4 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC23.7■■□□□ 1.38
Vps53Q8CCB4 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Vps53Q8CCB4 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms