Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdx1P18111 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdx1P18111 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdx1P18111 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Cdx1P18111 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Cdx1P18111 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdx1P18111 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdx1P18111 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Cdx1P18111 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Cdx1P18111 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdx1P18111 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdx1P18111 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdx1P18111 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdx1P18111 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdx1P18111 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdx1P18111 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC16.36■□□□□ 0.21
Cdx1P18111 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC16.36■□□□□ 0.21
Cdx1P18111 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Cdx1P18111 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Cdx1P18111 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Cdx1P18111 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdx1P18111 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdx1P18111 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Cdx1P18111 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdx1P18111 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdx1P18111 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdx1P18111 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdx1P18111 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdx1P18111 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdx1P18111 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdx1P18111 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC16.34■□□□□ 0.21
Cdx1P18111 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdx1P18111 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cdx1P18111 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdx1P18111 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdx1P18111 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC16.34■□□□□ 0.21
Cdx1P18111 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdx1P18111 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdx1P18111 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdx1P18111 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Cdx1P18111 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC16.33■□□□□ 0.21
Cdx1P18111 Gm38342-201ENSMUST00000195710 2980 ntBASIC16.33■□□□□ 0.21
Cdx1P18111 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC16.33■□□□□ 0.2
Cdx1P18111 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cdx1P18111 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdx1P18111 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdx1P18111 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cdx1P18111 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Cdx1P18111 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC16.33■□□□□ 0.2
Cdx1P18111 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Cdx1P18111 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdx1P18111 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdx1P18111 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdx1P18111 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Cdx1P18111 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
Cdx1P18111 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdx1P18111 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC16.32■□□□□ 0.2
Cdx1P18111 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Cdx1P18111 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Cdx1P18111 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC16.32■□□□□ 0.2
Cdx1P18111 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdx1P18111 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdx1P18111 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Cdx1P18111 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Cdx1P18111 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdx1P18111 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdx1P18111 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdx1P18111 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdx1P18111 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdx1P18111 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC16.31■□□□□ 0.2
Cdx1P18111 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdx1P18111 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdx1P18111 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdx1P18111 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC16.31■□□□□ 0.2
Cdx1P18111 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cdx1P18111 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdx1P18111 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdx1P18111 Gm42418-201ENSMUST00000182010 1831 ntBASIC16.31■□□□□ 0.2
Cdx1P18111 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdx1P18111 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cdx1P18111 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdx1P18111 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdx1P18111 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Cdx1P18111 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cdx1P18111 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdx1P18111 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdx1P18111 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cdx1P18111 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Cdx1P18111 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdx1P18111 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdx1P18111 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdx1P18111 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdx1P18111 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdx1P18111 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdx1P18111 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdx1P18111 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Cdx1P18111 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Cdx1P18111 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdx1P18111 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdx1P18111 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms