Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Nr1i3O35627 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Nr1i3O35627 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC22.17■■□□□ 1.14
Nr1i3O35627 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Nr1i3O35627 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC22.17■■□□□ 1.14
Nr1i3O35627 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Nr1i3O35627 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
Nr1i3O35627 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Nr1i3O35627 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Nr1i3O35627 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Nr1i3O35627 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Nr1i3O35627 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Nr1i3O35627 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Nr1i3O35627 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Nr1i3O35627 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Nr1i3O35627 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC22.16■■□□□ 1.14
Nr1i3O35627 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC22.16■■□□□ 1.14
Nr1i3O35627 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Nr1i3O35627 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC22.16■■□□□ 1.14
Nr1i3O35627 AC124392.1-201ENSMUST00000225172 5324 ntBASIC22.16■■□□□ 1.14
Nr1i3O35627 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nr1i3O35627 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nr1i3O35627 Gm10620-201ENSMUST00000098379 1332 ntBASIC22.15■■□□□ 1.14
Nr1i3O35627 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Nr1i3O35627 Gm5921-201ENSMUST00000075898 882 ntBASIC22.15■■□□□ 1.14
Nr1i3O35627 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nr1i3O35627 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC22.15■■□□□ 1.14
Nr1i3O35627 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
Nr1i3O35627 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nr1i3O35627 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Nr1i3O35627 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC22.15■■□□□ 1.14
Nr1i3O35627 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Nr1i3O35627 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC22.14■■□□□ 1.14
Nr1i3O35627 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Nr1i3O35627 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
Nr1i3O35627 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Nr1i3O35627 Gm13238-201ENSMUST00000117655 780 ntBASIC22.14■■□□□ 1.13
Nr1i3O35627 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Nr1i3O35627 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Nr1i3O35627 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Nr1i3O35627 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Nr1i3O35627 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Nr1i3O35627 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC22.13■■□□□ 1.13
Nr1i3O35627 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Nr1i3O35627 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC22.13■■□□□ 1.13
Nr1i3O35627 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Nr1i3O35627 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Nr1i3O35627 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Nr1i3O35627 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC22.12■■□□□ 1.13
Nr1i3O35627 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Nr1i3O35627 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Nr1i3O35627 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Nr1i3O35627 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Nr1i3O35627 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Nr1i3O35627 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Nr1i3O35627 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Nr1i3O35627 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Nr1i3O35627 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Nr1i3O35627 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
Nr1i3O35627 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC22.11■■□□□ 1.13
Nr1i3O35627 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Nr1i3O35627 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Nr1i3O35627 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Nr1i3O35627 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Nr1i3O35627 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Nr1i3O35627 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Nr1i3O35627 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
Nr1i3O35627 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC22.09■■□□□ 1.13
Nr1i3O35627 Notumos-201ENSMUST00000151998 2659 ntBASIC22.09■■□□□ 1.13
Nr1i3O35627 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC22.09■■□□□ 1.13
Nr1i3O35627 Gm10399-202ENSMUST00000202768 748 ntBASIC22.09■■□□□ 1.13
Nr1i3O35627 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Nr1i3O35627 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
Nr1i3O35627 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Nr1i3O35627 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Nr1i3O35627 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Nr1i3O35627 Gm4430-201ENSMUST00000192413 1943 ntBASIC22.08■■□□□ 1.13
Nr1i3O35627 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
Nr1i3O35627 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Nr1i3O35627 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Nr1i3O35627 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Nr1i3O35627 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Nr1i3O35627 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Nr1i3O35627 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Nr1i3O35627 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Nr1i3O35627 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
Nr1i3O35627 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Nr1i3O35627 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
Nr1i3O35627 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Nr1i3O35627 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Nr1i3O35627 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC22.07■■□□□ 1.12
Nr1i3O35627 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
Nr1i3O35627 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC22.06■■□□□ 1.12
Nr1i3O35627 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Nr1i3O35627 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Nr1i3O35627 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Nr1i3O35627 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Nr1i3O35627 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms