Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clip3B9EHT4 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clip3B9EHT4 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clip3B9EHT4 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.75■□□□□ 0.75
Clip3B9EHT4 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clip3B9EHT4 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.74■□□□□ 0.75
Clip3B9EHT4 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Clip3B9EHT4 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.74■□□□□ 0.75
Clip3B9EHT4 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Clip3B9EHT4 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Clip3B9EHT4 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Clip3B9EHT4 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Clip3B9EHT4 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Clip3B9EHT4 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.74■□□□□ 0.75
Clip3B9EHT4 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Clip3B9EHT4 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Clip3B9EHT4 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Clip3B9EHT4 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Clip3B9EHT4 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Clip3B9EHT4 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC19.73■□□□□ 0.75
Clip3B9EHT4 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Clip3B9EHT4 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Clip3B9EHT4 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Clip3B9EHT4 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Clip3B9EHT4 Gm43182-201ENSMUST00000199476 2528 ntBASIC19.72■□□□□ 0.75
Clip3B9EHT4 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Clip3B9EHT4 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Clip3B9EHT4 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Clip3B9EHT4 AC153962.1-201ENSMUST00000218530 1948 ntBASIC19.72■□□□□ 0.75
Clip3B9EHT4 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Clip3B9EHT4 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
Clip3B9EHT4 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Clip3B9EHT4 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Clip3B9EHT4 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Clip3B9EHT4 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Clip3B9EHT4 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Clip3B9EHT4 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Clip3B9EHT4 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Clip3B9EHT4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Clip3B9EHT4 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Clip3B9EHT4 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Clip3B9EHT4 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Clip3B9EHT4 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Clip3B9EHT4 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Clip3B9EHT4 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Clip3B9EHT4 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
Clip3B9EHT4 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.7■□□□□ 0.74
Clip3B9EHT4 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Clip3B9EHT4 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Clip3B9EHT4 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Clip3B9EHT4 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.7■□□□□ 0.74
Clip3B9EHT4 Gm9847-201ENSMUST00000052528 599 ntBASIC19.7■□□□□ 0.74
Clip3B9EHT4 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Clip3B9EHT4 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Clip3B9EHT4 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Clip3B9EHT4 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.69■□□□□ 0.74
Clip3B9EHT4 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.69■□□□□ 0.74
Clip3B9EHT4 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.69■□□□□ 0.74
Clip3B9EHT4 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Clip3B9EHT4 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Clip3B9EHT4 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Clip3B9EHT4 Iqck-206ENSMUST00000208658 2891 ntBASIC19.68■□□□□ 0.74
Clip3B9EHT4 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Clip3B9EHT4 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Clip3B9EHT4 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Clip3B9EHT4 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.68■□□□□ 0.74
Clip3B9EHT4 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.68■□□□□ 0.74
Clip3B9EHT4 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Clip3B9EHT4 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Clip3B9EHT4 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Clip3B9EHT4 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Clip3B9EHT4 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Clip3B9EHT4 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Clip3B9EHT4 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Clip3B9EHT4 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Clip3B9EHT4 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Clip3B9EHT4 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Clip3B9EHT4 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Clip3B9EHT4 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Clip3B9EHT4 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
Clip3B9EHT4 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clip3B9EHT4 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.66■□□□□ 0.74
Clip3B9EHT4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clip3B9EHT4 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.66■□□□□ 0.74
Clip3B9EHT4 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Clip3B9EHT4 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Clip3B9EHT4 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Clip3B9EHT4 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Clip3B9EHT4 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Clip3B9EHT4 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Clip3B9EHT4 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Clip3B9EHT4 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.65■□□□□ 0.74
Clip3B9EHT4 Gm43034-201ENSMUST00000198678 1364 ntBASIC19.65■□□□□ 0.74
Clip3B9EHT4 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Clip3B9EHT4 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Clip3B9EHT4 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Clip3B9EHT4 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Clip3B9EHT4 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Clip3B9EHT4 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Clip3B9EHT4 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms